Collaborative works
( 2003 — 2024 )
- Project: Visualization of genotype-tissue expression (GTEx) analysis data for expression profiling in different tissues sampled at different biological stages.
Dates: July 8 - Dec. 27, 2022Online: Dec. 28, 2022Service type: Web tools, Data repositoryCollaborations:: Teng Jinyan, Lingzhao FangStatus: Success, online
- Project: An inactive cytoscape tool for query/visulization of phenotypically related cattle traits by their underlining gene interactions discovered via functional genomics through integration of multi-omics data.
Dates: Mar. 10 - Jul. 21, 2022 Online: Aug. 10, 2022Service type: Web tools, Data repositoryCollaborations: Hamid Beiki, James Reecy, Iowa State University, on a manuscript "Beiki et al. (2022). Functional genomics of cattle through integration of multi-omics data (Manuscript under preparation)"Status: Success, online- Project: JBrowse for cattle transcription factors alignments
Dates: Feb. 10, 2018 - Apr. 07, 2018Online: Mar. 30, 2018Service type: Web tools, Data repositoryCollaborators: Marcela Maria de Souza and Luciana Correia de Almeida Regitano, BrazilStatus: Success, online- Project: JBrowse for goat genome and featured track alignments
Dates: Sep. 30, 2016 - Dec. 17, 2016Online: Oct. 10, 2016Service type: Web tools, Data repositoryCollaborators: Ben Rosen, USDA-ARSStatus: Success, online- Project: CGCN - Discover gene connectivities using gene expression data from the NCBI GEO repository - a cattle gene data set from weighted correlation network analysis to calculate similarity between gene expression values based on "Topological Overlap Measure (TOM)".
Dates: Feb. 10, 2016 - Nov. 10, 2016Online: Feb 23, 2016Service type: Web tools, Data repositoryCollaborators: Hamid Beiki, James Reecy, Iowa State UniversityStatus: Success, online- Project: Development of an EpiDB - Aims at providing gene and epigenetics expression data useful for dissecting quantitative trait data in livestock.
Dates: Sept 23, 2012 - On-goingOnline: Feb 04, 2016Service type: Database/web siteCollaborators: James Koltes, University of ArkansasStatus: Success, online, in further progress.- Project: Hosting the OMIA - Online Mendelian Inheritance in Animals database
Dates: Mar. 10, 2015 - Dec. 31, 2015 Online: Dec 27, 2016Service type: Database/web site, Virtual Machine hostCollaborators: Frank Nicholas, Matthew Hobbs, Sydney UniversityStatus: Success, online- Project: Developing databases resources for the Striped Bass Genome Database
Dates: Nov. 15, 2014 - On-going Online: April 7, 2016Service type: Virtual MachineCollaborators: Benjamin Reading and Charles H. Opperman, North Carolina State UniversityStatus: Success, online- Project: ISU Beef Project Database
Dates: February 11, 2011. Online:July 28, 2014 - currentService type: Database/web siteCollaborators: James ReecyStatus: Completed, in service- Project: Cattle RH and Genome Coordinates Map Alignments
Dates: September 2-12, 2013Service type: Web toolCollaborators: James ReecyStatus: Success- Project: VCF Miner: A Platform and Tools for Collaborative Information Mining from Next-Generation Sequence Variant Data
Dates: August 12, 2013 - Dec. 31, 2013Service type: Data repository / databaseCollaborators: Autumn Laughbaum, Carrie Finno, Claire Wade, Curt Van Tassell, Danika Bannasch, James Koltes, James Reecy, Jessica Petersen, Joern Wrede, Ludovic Orlando, Matthew McClure, Ottmar Distl, Robert D. Schnabel, Susan LamontStatus: Completed; transferred- Project: Blast Match of Query Sequences to Pig Genome Build 10.2 Genes by Their Map Locations -- A Pilot Analysis of 3 Pig Array Platforms
Dates: May 12, 2012 - June 1, 2012Service type: Experimental data analysisCollaborator: Chris Tuggle, Iowa State UniversityStatus: Completed- Project: CRI-MAP Users Forum
Dates: Ari, 16, 2013Collaborator: Jill Maddox, AustraliaStatus: Completed, online- Project: Annotation comparisons between multiple arrays
Dates: May 20, 2011 - June 15, 2011; Oct 10, 2011Collaborator: Chris Tuggle, Iowa State Univeristy; Bouabid Badaoui, CERSA, ItalyStatus: Completed- Project: Epigenetics Group: Listserv
Dates: Jan, 26, 2013Collaborator: Hasan Khatib, University of Wisconsin-MadisonStatus: Completed, in service- Project: Oyster Scaffold Tracks for Predicted mRNA, CDS, etc.
Dates: Feb, 13, 2013Collaborator: Steven Roberts of University of WashingtonStatus: Success, online- Project: OMIA Support Group: listserv
Dates: Jan, 19, 2013Collaborator: Frank Nicolas, The University of SydneyStatus: Success: in service- Project: Pig Genome Database
Dates: Apr. 2011 - 2014Status: Completed- Project: SheepModels Discussion Listserv
Dates: Jan, 2012Collaborator: Jill Maddox, The University of MelbourneStatus: Fullfilled- Project: Zebrafish Gbrowse
Dates: Jan, 2011Collaborator: John Liu, Auburn UniveristyStatus: Completed- Project: Ruminant Genome Biology Consortium
Dates: Oct, 2010 - 2015Collaborator: Hutton Oddy, University of New EnglandStatus: Completed- Project: ANEXdb and AnnotDB
Dates: Jan, 2007 - 2012Collaborator: Chris Tuggle, Iowa State UniversityStatus: Completed- Project: CRI-MAP Improvement website
Dates: Sep, 2010Collaborator: Jill Maddox, AustraliaStatus: Success, in service- Project: Teleost Alternative Splicing Database (TASD)
Dates: Jun, 2010Collaborator: John Liu, Auburn UniveristyStatus: Success, in service- Project: Catfish SNP Project (cBARBEL)
Dates: Jan, 2010 - Dec. 2011Collaborator: John Liu, Auburn UniveristyStatus: Completed- Project: Characterization of the rainbow trout transcriptome
Dates: Jun, 2010Collaborators: Moh Salem (West Virginia University)Status: Success, in service- Project: A pig gene wish list for annotation
Dates: Nov, 2009 - Sep, 2010Collaborator: The Pig Gene Annotation ConsortiumStatus: Completed- Project: Striped Bass Ovarian Transcriptome Sequence Database
Dates: Oct, 2009Collaborators: Craig Sullivan (NCSU) and Robert Chapman (DNR)Status: Success, in service- Project: Map of INRA Pig Oligo Sequence to Pig Genome
Dates: Jan - Feb, 2009Collaborators: Yu Gao and Claire Rogel-Gaillard (INRA)Status: Success- Project: MSU PRP Database
Dates: Feb - May, 2009Collaborator: Cathy Ernst (MSU)Status: InactiveStatus: Inactive- Project: Linkage Maps of Rainbow Trout
Dates: Feb - Apr, 2009Collaborator: Caird Rexroad (ARS, USDA)Status: Success, online- Project: Pig Oligo Array Annotations
Dates: Aug - Nov, 2008Collaborators: Joan Lunney (USDA), Juan Steibel and Cathy Ernst (MSU)Status: Success, results published- Project: Berk-York QTL Project Database
Dates: Aug - Oct, 2008Collaborator: Max Rothschild, Iowa State UniversityStatus: Complete, in service- Project: PRRS Host Genomic Consortium (PHGC) Database
Dates: Jun, 2008 - On-goingCollaborators: Joan Lunney (USDA), JP Steibel (MSU), Max Rothschild (ISU), Raymond Rowland (KSU)Status: Success, in service- Project: Compiled Pig Public SNP data (May - Jul, 2008)
Collaborators: Pig 60K SNP Chip Consortium, Martien Groenen et al., Wageningen UniversityStatus: Completed- Project: Lush Geneticists Pedigree
Dates: Dec, 2007 - CurrentCollaborator: Jack Dekkers, Iowa State UniversityStatus: Completed- Project: SNP Discoveries in shrimp ( Monodon, Vaname and Combined)
Dates: Jul - Nov, 2007Collaborator: Max Rothschild, Iowa State UniversityStatus: Completed- Project: Automated pig genome sequencing progress track
Dates: Jan, 2005Collaborator: Max Rothschild, Iowa State UniversityStatus: Completed© 2003-2024: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team - Project: An inactive cytoscape tool for query/visulization of phenotypically related cattle traits by their underlining gene interactions discovered via functional genomics through integration of multi-omics data.