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Recent collaborative works:
- Project: JBrowse for cattle transcription factors alignments
Dates: Feb. 10, 2018 - Apr. 07, 2018Online: Mar. 30, 2018
Service type: Web tools, Data repository
Collaborators: Marcela Maria de Souza and Luciana Correia de Almeida Regitano, Brazil
- Project: JBrowse for goat genome and featured track alignments
Dates: Sep. 30, 2016 - Dec. 17, 2016Online: Oct. 10, 2016
Service type: Web tools, Data repository
Collaborators: Ben Rosen, USDA-ARS
- Project: CGCN - Discover gene connectivities using gene expression data from the NCBI GEO repository - a cattle gene data set from weighted correlation network analysis to calculate similarity between gene expression values based on "Topological Overlap Measure (TOM)".
Dates: Feb. 10, 2016 - Nov. 10, 2016Online: Feb 23, 2016
Service type: Web tools, Data repository
Collaborators: Hamid Beiki, James Reecy, Iowa State University
- Project: Development of an EpiDB - Aims at providing gene and epigenetics expression data useful for dissecting quantitative trait data in livestock.
Dates: Sept 23, 2012 - On-goingOnline: Feb 04, 2016
Service type: Database/web site
Collaborators: James Koltes, University of Arkansas
- Project: Hosting the OMIA - Online Mendelian Inheritance in Animals database
Dates: Mar. 10, 2015 - Dec. 31, 2015 Online: Dec 27, 2016
Service type: Database/web site, Virtual Machine host
Collaborators: Frank Nicholas, Matthew Hobbs, Sydney University
- Project: Developing databases resources for the Striped Bass Genome Database
Dates: Nov. 15, 2014 - On-going Online: April 7, 2016
Service type: Virtual Machine
- Project: ISU Beef Project Database
Dates: July 28, 2014 - current
Service type: Database/web site
Collaborators: James Reecy
- Project: Cattle RH and Genome Coordinates Map Alignments
Dates: September 2-12, 2013
Service type: Web tool
Collaborators: James Reecy
- Project: VCF Miner: A Platform and Tools for Collaborative Information Mining from Next-Generation Sequence Variant Data
Dates: August 12, 2013 - Dec. 31, 2013
Service type: Data repository / database
Collaborators: Autumn Laughbaum, Carrie Finno, Claire Wade, Curt Van Tassell, Danika Bannasch, James Koltes, James Reecy, Jessica Petersen, Joern Wrede, Ludovic Orlando, Matthew McClure, Ottmar Distl, Robert D. Schnabel, Susan Lamont
- Project: Blast Match of Query Sequences to Pig Genome Build 10.2 Genes by Their Map Locations -- A Pilot Analysis of 3 Pig Array Platforms
Dates: May 12, 2012 - June 1, 2012
Service type: Experimental data analysis
Collaborator: Chris Tuggle, Iowa State University
- Project: CRI-MAP Users Forum
Dates: Ari, 16, 2013
Collaborator: Jill Maddox, Australia
- Project: Annotation comparisons between multiple arrays
Dates: May 20, 2011 - June 15, 2011; Oct 10, 2011
Collaborator: Chris Tuggle, Iowa State Univeristy; Bouabid Badaoui, CERSA, Italy
- Project: Epigenetics Group
Dates: Jan, 26, 2013
Collaborator: Hasan Khatib, University of Wisconsin-Madison
- Project: Oyster Scaffold Tracks for Predicted mRNA, CDS, etc.
Dates: Feb, 13, 2013
Collaborator: Steven Roberts of University of Washington
- Project: OMIA Support Group
Dates: Jan, 19, 2013
Collaborator: Frank Nicolas, The University of Sydney
- Project: Pig Genome Database
Dates: Apr. 2011 - 2014
- Project: SheepModels Discussion Listserv
Dates: Jan, 2012
Collaborator: Jill Maddox, The University of Melbourne
- Project: Zebrafish Gbrowse
Dates: Jan, 2011
Collaborator: John Liu, Auburn Univeristy
- Project:
Ruminant Genome Biology Consortium
Dates: Oct, 2010 - 2015
Collaborator: Hutton Oddy, University of New England
- Project:
ANEXdb and AnnotDB
Dates: Jan, 2007 - 2012
Collaborator: Chris Tuggle, Iowa State University
- Project: CRI-MAP Improvement website
Dates: Sep, 2010
Collaborator: Jill Maddox, Australia
- Project: Teleost Alternative Splicing Database (TASD)
Dates: Jun, 2010
Collaborator: John Liu, Auburn Univeristy
- Project:
Catfish SNP Project (cBARBEL)
Dates: Jan, 2010 - Dec. 2011
Collaborator: John Liu, Auburn Univeristy
- Project: Characterization of the rainbow trout transcriptome
Dates: Jun, 2010
Collaborators: Moh Salem (West Virginia University)
- Project: A pig gene wish list for annotation
Dates: Nov, 2009 - Sep, 2010
Collaborator: The Pig Gene Annotation Consortium
- Project: Striped Bass Ovarian Transcriptome Sequence Database
Dates: Oct, 2009
Collaborators: Craig Sullivan (NCSU) and Robert Chapman (DNR)
- Project: Map of INRA Pig Oligo Sequence to Pig Genome
Dates: Jan - Feb, 2009
Collaborators: Yu Gao and Claire Rogel-Gaillard (INRA)
- Project: MSU PRP Database
Dates: Feb - May, 2009
Collaborator: Cathy Ernst (MSU)
- Project: Linkage Maps of Rainbow Trout
Dates: Feb - Apr, 2009
Collaborator: Caird Rexroad (ARS, USDA)
- Project: Pig Oligo Array Annotations
Dates: Aug - Nov, 2008
Collaborators: Joan Lunney (USDA), Juan Steibel and Cathy Ernst (MSU)
- Project: Berk-York QTL Project Database
Dates: Aug - Oct, 2008
Collaborator: Max Rothschild, Iowa State University
- Project: PRRS Host Genomic Consortium (PHGC) Database
Dates: Jun, 2008 - On-going
Collaborators: Joan Lunney (USDA), JP Steibel (MSU), Max Rothschild (ISU), Raymond Rowland (KSU)
- Project: Compiled Pig Public SNP data (May - Jul, 2008)
Collaborators: Pig 60K SNP Chip Consortium, Martien Groenen et al., Wageningen University
- Project: Lush Geneticists Pedigree
Dates: Dec, 2007 - Current
Collaborator: Jack Dekkers, Iowa State University
- Project: SNP Discoveries in shrimp (
Monodon,
Vaname and
Combined)
Dates: Jul - Nov, 2007
Collaborator: Max Rothschild, Iowa State University
- Project: Automated pig genome sequencing progress track
Dates: Jan, 2005
Collaborator: Max Rothschild, Iowa State University
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