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Characterization of the rainbow trout transcriptome using Sanger and Next GENeration sequencing

Moh Salem (mosalem@mail.wvu.edu)
Division of Animal and Nutritional Sciences, West Virginia University

This rainbow trout transcriptome reference sequence was assembled using ~1.3 million 454-pyrosequencing ESTs (average length of 344bp, a total of 447 million bases) of a Swanson rainbow trout doubled-haploid fish in addition to the 258,973 Sanger-based sequences downloaded from the Trout Gene Index database release 7.0, July 6, 2008, http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=r_trout. The assembly resulted in 161,818 TCs (Average length 758 nt) and 261,071 singletons. For inquiries, please contact: Moh Salem (mosalem@mail.wvu.edu)
  • Rainbow Trout EST Contigs
    (Last updated: Jan 25, 2011)
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  • Rainbow Trout EST Singletons
    (Last updated: Sep 27, 2010)
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