AnGenMap

Archived Post

From zhuiastate.edu  Tue Apr 27 14:56:46 2010
From: "Hu, Zhiliang [AN S]" <zhuiastate.edu>
To: Multiple Recipients of <angenmapanimalgenome.org>
Subject: What's new on NAGRP animal genome web site (#2, 2010)
Date: Tue, 27 Apr 2010 14:56:46 -0500

What's new on NAGRP animal genome web site (#2, 2010)

o Announcing the Release 11 of the Animal QTLdb:
  As of April 23, 2010, a total of 1643 new QTL have been added to the
  Animal QTLdb since last release before the New Year.  The new data
  included 1532 cattle QTL and 111 pig QTL.  We encourage all users to
  add your own new QTL data through the Curator web form:
  URL: http://www.animalgenome.org/QTLdb/app.html

o SAM data format is now available for data download from the Animal
  QTLdb.  The SAM data format is to assist users using SAM Tools (for
  details using SAM tools, see: http://samtools.sourceforge.net/).
  URL: http://www.animalgenome.org/QTLdb/

o A major improvement to the CateGOrizer online tool is made to improve
  its performance.  The improvement included faster algorithms and more
  efficient ways to handle large data sets.
  URL: http://www.animalgenome.org/...ioinfo/tools/catego/

o Animal QTLdb frequently asked questions is updated with new items.
  The most recent additions are to address possible confusions that some
  downloaded QTL data may "appear" like "duplicates".  The FAQ explained
  why and provided hints as how to correctly examine the downloaded data.
  URL: http://www.animalgenome.org/QTLdb/

o A generic online tool has been in development to help users to convert
  their mapping data file into GFF3 format, which is useful to upload to
  GBrowse for map alignments of the genome features.  Please let us know
  if you have data that are not on our input file format list.
  URL: http://www.animalgenome.org/cgi-bin/util/2gff

Check out the "what's new" page for more up-to-date information on this
site: http://www.animalgenome.org/news/whatsnew.html

--
NAGRP Bioinfo Team
bioinfo-teamanimalgenome.org



 
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