What's New on the NAGRP Animal Genome Web Site
|Major updates / permanent additions:
|The NAGRP Data Repository FAQ is updated, adding answers about NAGRP Data locators versus what some users wish to call "data accession" numbers. The update also included our forward-looking steps to safeguard the hosted data for a long term sustainability.
|| ||Update, Mar 16, 2019|
|The AnGenMap FAQ is updated on how to easily make long URL short in order to avoid it being truncated in email transfers.
|| ||Update, Feb. 15, 2019|
|The NAGRP Data Repository at the AnimalGenome.ORG is taking forward-looking steps to safeguard the hosted data for a long term sustainability. A new message is posted on the web site to encourage users to start using Open Science Framework for their open data host options in the future.
|| ||New, Feb. 07, 2019|
|A new version (LBO version 4.1) of Livestock Breed Ontology data is loaded.
|| ||Update, Jan. 24, 2019|
|FAANG past meeting archives are gethered and made available. Archives from future meetings will be added to the same resource page also.
||New, Jan. 10, 2019|
|What's new on the NAGRP animal genome web site (#1, 2019)
||New, Jan. 3, 2019|
|An improved version of the QTL/association data enrichment test tool was made available recently to allow user defined sizes of chromosome regions for enrichment test. The new feature is to be presented on the upcoming Plant and Animal Genome meeting in San Diego, with a poster titled: "Implementation of a new data enrichment analysis tool in the Animal QTL Database".
|| ||New, Dec. 19, 2018|
|A new version (v.8.7) of Vertebrate Trait (VT) data is loaded.
|| ||Update, Dec. 04, 2018|
|A new version (LBO version 3.8) of Livestock Breed Ontology data is loaded.
|| ||Update, Nov. 21, 2018|
|A new Ensembl gene models for the new cattle genome build BovARS_1.2 is added to its JBrowse tracks that align with QTL/associations, Genbank annotations, and SNP liftover locations.
|| ||New, Nov. 8, 2018|
|An interactive world map showing the FAANG memberships is added to the FAANG website.
|| ||New, Nov. 3, 2018|
|A world map showing the distribution of AnGenMap Members is added to the web site.
|| ||New, Oct. 31, 2018|
|An automated updates of the Animal QTLdb user visit and data download activities is added to the web site (light cyan text on the right hand side below the graph column). The text is hyper-linked to a world map showing locations of unique visitors to the database, which is also made available recently.
|| ||New, Oct. 24, 2018|
|September newsletter of FAANG Europe COST Action is posted on FAANG web site.
|| ||New, Oct. 17, 2018|
|US Pig Genome Newsletter #126 is posted on ANGENMAP and its PDF and text versions are archived.
|| ||New, Oct. 11, 2018|
|A QTL/association data enrichment test tool has been implemented in the Animal QTLdb. The tool takes a set of selected traits to perform a genome-wide data dristribution analysis with Chi-square test of a two-way contingency table (traits by chromosomes) for the most plausible locations where certain traits may be over-represented. The tool has been reported in our recent paper "Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB" published on the upcoming Nucleic Acids Research 2019 Database issue.
|| ||New, Oct. 10, 2018|
|A new version (v.8.6) of Vertebrate Trait (VT) and a new version (v.2.2) of Livestock Breed Ontology data are loaded.
|| ||Update, Oct. 3, 2018|