Archived Post

From  Fri May 31 12:30:01 2019
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From: Chris Elsik <>
Postmaster: submission approved by list moderator
To: Members of AnGenMap <>
Subject: Resources for Bovine ARS-UCD1.2 at Bovine Genome Database
Date: Fri, 31 May 2019 12:30:02 -0500

The Bovine Genome Database ( has new resources for
the bovine ARS-UCD1.2 reference genome assembly, and these are accessible
from the BGD main navigation bar:

 - BovineMine v1.6 includes the newest Ensembl and RefSeq gene sets with
   computed gene expression levels for ~90 tissues, SNP and variant
   consequences from Ensembl, QTL from AnimalQTLdb, and many other annotation
   data sources.
 - ARS-UCD1.2 JBrowse has tracks for the new gene sets, RNAseq, Iso-seq,
   SNP, QTL, repeats, and alignments to the UMD3.1.1 assembly connected to
   UMD3.1.1 JBrowse.
 - The Apollo Annotation tool is available for ARS-UCD1.2, and allows
   research community members to manually annotate genes.

Please let us know if you have any questions!

best regards,
Chris Elsik and the BGD Developers

Christine Elsik
Associate Professor
Divisions of Animal and Plant Sciences
S134-D Animal Sciences Research Center
920 East Campus Drive
University of Missouri
Columbia, MO 65211
phone: 573-884-7422
fax: 573-882-6827

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