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From listmasteranimalgenome.org  Fri May 31 12:30:01 2019
Return-Path: <listmasteranimalgenome.org>
From: Chris Elsik <elsikcmissouri.edu>
Postmaster: submission approved by list moderator
To: Members of AnGenMap <angenmapanimalgenome.org>
Subject: Resources for Bovine ARS-UCD1.2 at Bovine Genome Database
Date: Fri, 31 May 2019 12:30:02 -0500

The Bovine Genome Database (http://bovinegenome.org) has new resources for
the bovine ARS-UCD1.2 reference genome assembly, and these are accessible
from the BGD main navigation bar:

 - BovineMine v1.6 includes the newest Ensembl and RefSeq gene sets with
   computed gene expression levels for ~90 tissues, SNP and variant
   consequences from Ensembl, QTL from AnimalQTLdb, and many other annotation
   data sources.
 - ARS-UCD1.2 JBrowse has tracks for the new gene sets, RNAseq, Iso-seq,
   SNP, QTL, repeats, and alignments to the UMD3.1.1 assembly connected to
   UMD3.1.1 JBrowse.
 - The Apollo Annotation tool is available for ARS-UCD1.2, and allows
   research community members to manually annotate genes.

Please let us know if you have any questions!

best regards,
Chris Elsik and the BGD Developers

--
Christine Elsik
Associate Professor
Divisions of Animal and Plant Sciences
S134-D Animal Sciences Research Center
920 East Campus Drive
University of Missouri
Columbia, MO 65211
phone: 573-884-7422
fax: 573-882-6827


 
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