| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
19.7-19.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs318410870 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 5.3% | | P_values | 1.25E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | RIPOR2 (RHO family interacting cell polarization regulator 2) |
| Cis/Trans acting type: |  |
| Links:
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Chinese Erhualian pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using a custom Affymetrix Axiom 1.4M SNP BeadChip, and GWAS were performed for traits related to muscle glycolytic potential. A total of 732,609 SNPs were used for analysis. |
| Analysis: | Association analyses were performed using the Genome-wide Efficient Mixed-Model Association (GEMMA) method. |
| Software: | GEMMA, PLINK v1.9, Haploview v4.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Xie X, Huang C, Huang Y, Zou X, Zhou R, Ai H, Huang L, Ma J |
| Affiliation: | National Key Laboratory for Swine Genetic Improvement and Production Technology, Ministry of Science and Technology of China, Jiangxi Agricultural University, Nanchang, China |
| Title: | Genetic architecture for skeletal muscle glycolytic potential in Chinese Erhualian pigs revealed by a genome-wide association study using 1.4M SNP array |
| Journal: | Frontiers in Genetics, 2023, 14: 1141411 |
| Links: |
PubMed | Abstract | List all data
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