| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 45.85 (cM) |
| QTL Span: | 45.85-45.86 (cM)
48.5-48.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0228 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a 25% Iberian/75% Landrace backcross pigs from the IBMAP population. |
| Breeds associated:
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| Design: | CNV regions were detected and analyzed for their association with fatty acid composition and growth traits. |
| Analysis: | A multiplicative effect model was used. |
| Software: | CNVassoc, glm, and q-value R packages, Control-FREEC, CNVRuler |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Revilla M, Puig-Oliveras A, Castelló A, Crespo-Piazuelo D, Paludo E, Fernández AI, Ballester M, Folch JM |
| Affiliation: | Departament de Ciència Animal i dels Aliments, Facultat de Veterinària, Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain |
| Title: | A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits |
| Journal: | PloS one, 2017, 12(5): e0177014 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | In IMF |
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