Pig QTL Database

Trait Information

Trait name:

Fat-cuts percentage

Vertebrate Trait Ontology:

n/a

Reported name:

Fat-cuts percentage

Product Trait Ontology:

Dressed carcass composition trait

Symbol:

FATCP

Clinical Measurement Ontology:

n/a

QTL Map Information

Chromosome:

QTL Peak Location:

22.6 (cM)

QTL Span:

7.3-31.6 (cM)
7.3-32.8 (Mbp)

Upper, "Suggestive":

n/a

Upper, "Significant":

EAI

Peak:

LEP

Lower, "Significant":

SW787

Lower, "Suggestive":

n/a

Marker type:

Microsatellites

Analysis type:

QTL

Model tested:

n/a

Test base:

n/a

Threshold significance level:

n/a

F_Stat

6.2

VARIANCE

3.5

Dominance effect:

0.01

Additive effect:

-0.07

Associated Gene:

CFTR (cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7))

Cis/Trans acting type:

Links: NCBI GeneDB | Edit | Map view

Extended information:

(none)

QTL Experiment in Brief

Animals:

Purebred pigs of the three genetically diverse founder groups Meishan (M), Pietrain (P) and European Wild Boar (W) were mated to get the highest degree of heterozygosity. All were housed under the same conditions, except for the wild boar.

Breeds associated:

n/a

Design:

Forty-six traits for growth, fattening, fat deposition, muscling, meat quality, stress resistance and body conformation were considered. One hundred eighty-five different marker loci were genotyped, including 129 microsatellite and 56 type I loci.

Analysis:

Critical threshold values of the test statistic were derived by a permutation test. Genome-wide thresholds were calculated from the combined data applying a Bonferroni correction.

Software:

Crimap, version 2.4

Notes:

Crimap used for: number of informative meioses and for the analysis of marker linkage.

Links:

Edit

Reference

Authors:

M. Dragos-Wendrich, A. Stratil, J. Hojny, G. Moser, H. Bartenschlager, G. Reiner, H. Geldermann

Affiliation:

University of Hohenhim, Stuttgart, Germany; Academy of Sciences of the Czech Republic, Libechov, Czech Republic

Title:

Linkage and QTL mapping for Sus scrofa chromosome 18

Journal:

J Anim Breed Genet, 2003, 120(1): 138-143

Links:

No PubMed entry | Abstract | List all data | Edit

Additional Information

Comments:

W x M Family

Cite this Data:

Animal QTLdb: QTL1199 was published in 2003, and was curated into QTLdb on 2011-11-14. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:1199

QTL 1199 Description: