Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of litter traits traits:
11
Number of QTL / associations found:
3,029
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are litter traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
951.34699
18
1.729527e-190
3.286101e-189
Chromosome 1
1779.19775
18
9e-41
2.442857e-40
Chromosome 2
253.21560
18
1.808002e-43
5.725340e-43
Chromosome 3
2.02774
18
0.9999987
9.999987e-01
Chromosome 4
1.44672
18
0.998329325823115
9.999987e-01
Chromosome 5
48.16669
18
0.0001422073
1.801292e-04
Chromosome 6
156.19846
18
4.611447e-24
9.735277e-24
Chromosome 7
578.67975
18
2.748958e-111
2.611510e-110
Chromosome 8
12.72271
18
0.8077756
9.028080e-01
Chromosome 9
45.14532
18
0.0003948496
4.688839e-04
Chromosome 10
148.68832
18
1.336216e-22
2.308009e-22
Chromosome 11
175.41667
18
7.736875e-28
1.837508e-27
Chromosome 12
155.16347
18
7.341842e-24
1.394950e-23
Chromosome 13
97.43976
18
6.505422e-13
9.507924e-13
Chromosome 14
82.50319
18
3.114371e-10
4.226646e-10
Chromosome 15
137.12182
18
2.293182e-20
3.630871e-20
Chromosome 16
323.01786
18
8.700259e-58
3.306098e-57
Chromosome 17
480.17365
18
1.526500e-90
9.667833e-90
Chromosome 18
392.49320
18
3.357834e-72
1.594971e-71
Chi-squared (χ2) test: Which of the 11 litter traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Birth weight variability
63.1087
10
9.30894e-10
5.119917e-09
Corpus luteum number
37.09957
10
5.439216e-05
9.971896e-05
Embryo survival
23.4924
10
0.009067946
1.246843e-02
Litter weight, piglets born alive
25.49951
10
0.004474952
7.032067e-03
Litter weight, total
47.40977
10
7.95255e-07
2.186951e-06
Number of litters
220.7788
10
7.342931e-42
8.077224e-41
Number of non-viable fetuses
22.22372
10
0.01400458
1.711671e-02
Number of viable embryos
41.23708
10
1.024408e-05
2.253698e-05
Number of viable fetuses
11.06774
10
0.3522649
3.874914e-01
Offspring number
7.95515
10
0.633218
6.332180e-01
Piglet mortality
61.18048
10
2.165433e-09
7.939921e-09
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
5820.165670
Number of traits:
11
df
=
180
Number of QTLs:
3,029
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
