| QTL Map Information |
|---|
| Chromosome: | 22 |
| QTL Peak Location: | n/a |
| QTL Span: | 50.2-62.6 (cM)
27.6-34.4 (Mbp) |
 |
Upper, "Suggestive": | OMM1292 |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | BX913059 |
| Marker type: | Microsatellites |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Suggestive |
 |
LikelihoodR | 19.61 | | F_Stat | 2.9 | | VARIANCE | 0.23 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #17147
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Seven full-sib families including 222 offspring from a broodstock population at the NCCCWA in Leetown, West Virginia, USA, were used for QTL mapping. |
| Breeds associated:
n/a
|
| Design: | Two stress response phenotypes were used for QTL analyses. First, we estimated animal breeding value (EBV) using four repeated measurements of plasma cortisol and fitting a mixed inheritance linear model under a Bayesian framework with software iBay version 1.46. We also estimated an animal effect using best linear unbiased prediction (BLUP) and fitting four repeated measurements of plasma cortisol in a multivariate mixed model with the software ASReml version 2.0. |
| Analysis: | We performed combined sire-family (five HS (half-sib) families) and dam-family (seven HS families) HS regression analysis, separately. We also performed a genome scan for genetic loci linked to stress response phenotypes (animal BLUP index and EBV for plasma cortisol) using a variance components (VARCOMP) method. |
| Software: | GridQTL and SOLAR version 4.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Rexroad Caird E, Vallejo Roger L, Liu Sixin, Palti Yniv, Weber Gregory M, |
| Affiliation: | USDA/ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA. |
| Title: | QTL affecting stress response to crowding in a rainbow trout broodstock population. |
| Journal: | BMC genetics, 2012, 13 (): 97 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | EBV, Dam, GridQTL |
User inputs on reference #23134666
Add your comments
Note similar findings
Note contradictions
|
