Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of anatomy traits:
45
Number of QTL / associations found:
354
Number of chromosomes where QTL / associations are found:
25
Chi-squared (χ2) test: are anatomy traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
328.04730
24
3.615731e-55
1.004370e-54
Chromosome 1
3639.23370
24
9e-41
1.607143e-40
Chromosome 2
15500.92860
24
9e-41
1.607143e-40
Chromosome 3
108.38655
24
1.077741e-12
1.347176e-12
Chromosome 4
211.60665
24
5.83033e-32
9.109891e-32
Chromosome 5
550.37790
24
5.48771e-101
6.859637e-100
Chromosome 6
5300.54730
24
9e-41
1.607143e-40
Chromosome 7
328.04730
24
3.615731e-55
1.004370e-54
Chromosome 8
550.37790
24
5.48771e-101
6.859637e-100
Chromosome 9
25.63200
24
0.3720975
4.044538e-01
Chromosome 10
211.60665
24
5.83033e-32
9.109891e-32
Chromosome 11
31.73400
24
0.1337272
1.519627e-01
Chromosome 12
395.80155
24
5.460763e-69
3.412977e-68
Chromosome 13
120.58965
24
7.617667e-15
1.002325e-14
Chromosome 14
120.58965
24
7.617667e-15
1.002325e-14
Chromosome 15
266.64930
24
8.086905e-43
1.837933e-42
Chromosome 16
74.44575
24
4.549129e-07
5.415630e-07
Chromosome 17
328.04730
24
3.615731e-55
1.004370e-54
Chromosome 18
0.08145
24
0.998329325823115
9.983293e-01
Chromosome 19
14.82705
24
0.9257173
9.642889e-01
Chromosome 20
395.80155
24
5.460763e-69
3.412977e-68
Chromosome 22
120.58965
24
7.617667e-15
1.002325e-14
Chromosome 23
328.04730
24
3.615731e-55
1.004370e-54
Chromosome 24
266.64930
24
8.086905e-43
1.837933e-42
Chromosome 26
328.04730
24
3.615731e-55
1.004370e-54
Chi-squared (χ2) test: Which of the 45 anatomy traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Biceps femoris muscle weight
3.21426
44
1
1.000000e+00
Bone area
145.25806
44
9.496457e-13
2.642510e-11
Bone weight in carcass
32.13753
44
0.9078121
1.000000e+00
Butt circumference
3.21426
44
1
1.000000e+00
Carcass bone percentage
99.73997
44
3.278397e-06
4.917596e-05
Carcass compactness
24.28569
44
0.993101
1.000000e+00
Carcass length
24.18307
44
0.9934107
1.000000e+00
Carcass width
11.04762
44
1
1.000000e+00
Dressing percentage
25.26566
44
0.9895013
1.000000e+00
Foreleg length
22.96776
44
0.9962885
1.000000e+00
Gluteus medius muscle weight
3.21426
44
1
1.000000e+00
Hind leg length
22.94953
44
0.996322
1.000000e+00
Hindquarter weight
3.21426
44
1
1.000000e+00
Hot carcass weight
23.05728
44
0.9961206
1.000000e+00
Jaw length
29.3898
44
0.955459
1.000000e+00
Lean meat weight
31.1818
44
0.9270984
1.000000e+00
Lean meat yield percentage
52.74067
44
0.171975
1.000000e+00
Leg muscle weight
3.21426
44
1
1.000000e+00
Leg weight
3.32536
44
1
1.000000e+00
Leg yield
24.45042
44
0.9925792
1.000000e+00
Loin weight
12.75002
44
0.999999
1.000000e+00
Loin yield
27.90375
44
0.9720624
1.000000e+00
Longissimus muscle area
66.1351
44
0.0170417
1.533753e-01
Longissimus muscle depth
49.7811
44
0.2541227
1.000000e+00
Longissimus muscle weight
11.04762
44
1
1.000000e+00
Longissimus muscle width
144.66426
44
1.174449e-12
2.642510e-11
Lumbar weight
3.21426
44
1
1.000000e+00
Metacarpal length
34.18461
44
0.8562425
1.000000e+00
Muscle density
46.61948
44
0.3651677
1.000000e+00
Number of ribs
45.73283
44
0.4000324
1.000000e+00
Semimembranosus muscle weight
3.21426
44
1
1.000000e+00
Semitendinosus muscle weight
3.21426
44
1
1.000000e+00
Shoulder bone percentage
3.21426
44
1
1.000000e+00
Shoulder bone weight
3.21426
44
1
1.000000e+00
Shoulder muscle percentage
3.21426
44
1
1.000000e+00
Shoulder weight
11.24357
44
0.9999999
1.000000e+00
Shoulder yield
34.84593
44
0.8366224
1.000000e+00
Soft tissue depth at GR site
11.87444
44
0.9999997
1.000000e+00
Spleen weight
43.24998
44
0.5036572
1.000000e+00
Thigh cross-sectional area
9.64285
44
1
1.000000e+00
Total muscle area
18.08445
44
0.9998136
1.000000e+00
forequarter weight
6.4286
44
1
1.000000e+00
muscle weight in carcass
44.77181
44
0.4392625
1.000000e+00
muscle-to-bone ratio
92.80476
44
2.432382e-05
2.736430e-04
shoulder muscle weight
3.21426
44
1
1.000000e+00
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
25
χ2
=
29546.692650
Number of traits:
45
df
=
1056
Number of QTLs:
354
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
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