Release 56
(Apr 24, 2025)

Whole genome analysis for QTL/association enrichment

Running...
Version: Enrich S: beta v0.8
Search: to limit the list of your trait choices:
(optional) focus on chromosome with Mb windows across its length

Data:

Number of fiber traits:6
Number of QTL / associations found:121
Number of chromosomes where QTL / associations are found:21

Chi-squared (χ2) test: are fiber traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome 118.70368200.54115549.999922e-01
Chromosome 25.21604200.99961539.999922e-01
Chromosome 35.21604200.99961539.999922e-01
Chromosome 414.73672200.79126919.999922e-01
Chromosome 514.73672200.79126919.999922e-01
Chromosome 63.23256200.99999229.999922e-01
Chromosome 77.94334200.9922369.999922e-01
Chromosome 83.23256200.99999229.999922e-01
Chromosome 914.73672200.79126919.999922e-01
Chromosome 107.94334200.9922369.999922e-01
Chromosome 117.94334200.9922369.999922e-01
Chromosome 1223.61276200.25971689.090088e-01
Chromosome 135.21604200.99961539.999922e-01
Chromosome 1423.61276200.25971689.090088e-01
Chromosome 1514.73672200.79126919.999922e-01
Chromosome 1670.67058201.414979e-071.485728e-06
Chromosome 1723.61276200.25971689.090088e-01
Chromosome 1823.61276200.25971689.090088e-01
Chromosome 197.94334200.9922369.999922e-01
Chromosome 223.23256200.99999229.999922e-01
Chromosome 251016.14170201.409079e-2022.959066e-201

Chi-squared (χ2) test: Which of the 6 fiber traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Fiber curvature 19.17503 5 0.001783039 0.0026745585
Fiber diameter coefficient of variance 20.30181 5 0.001096783 0.0021935660
Fiber diameter standard deviation 24.99419 5 0.0001396942 0.0008381652
Mean fiber diameter 12.93301 5 0.02401469 0.0288176280
Primary fiber diameter 4.54057 5 0.4744737 0.4744737000
Primary fiber diameter coefficient of variance 21.05313 5 0.0007915486 0.0021935660

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:21 χ2=1316.033040
Number of traits:6 df=100
Number of QTLs:121 p-value=3.716252e-211

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team