Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of egg production traits:
7
Number of QTL / associations found:
1,097
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are egg production traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
126.75845
28
1.597205e-14
2.724644e-14
Chromosome 1
3584.22883
28
9e-41
6.525000e-40
Chromosome 2
1219.28807
28
4.529152e-239
1.313454e-237
Chromosome 3
23.09846
28
0.7280971
8.121083e-01
Chromosome 4
32.10851
28
0.2701176
3.405831e-01
Chromosome 5
394.50684
28
2.537532e-66
3.679421e-65
Chromosome 6
0.25438
28
0.998329325823115
9.983293e-01
Chromosome 7
21.69468
28
0.7952265
8.541322e-01
Chromosome 8
133.18417
28
1.208046e-15
2.189583e-15
Chromosome 9
30.44944
28
0.3420619
4.133248e-01
Chromosome 10
117.25707
28
6.845355e-13
1.102863e-12
Chromosome 11
88.16591
28
3.825202e-08
5.546543e-08
Chromosome 12
12.35920
28
0.9953348
9.983293e-01
Chromosome 13
25.88698
28
0.579257
6.719381e-01
Chromosome 14
175.86058
28
2.292911e-23
5.114955e-23
Chromosome 15
187.45489
28
1.580082e-25
4.165671e-25
Chromosome 16
250.97814
28
1.085036e-37
5.244341e-37
Chromosome 17
35.38199
28
0.1590193
2.195981e-01
Chromosome 18
224.45857
28
1.477226e-32
6.119936e-32
Chromosome 19
133.18417
28
1.208046e-15
2.189583e-15
Chromosome 20
32.10851
28
0.2701176
3.405831e-01
Chromosome 21
199.41936
28
8.828351e-28
2.560222e-27
Chromosome 22
211.75392
28
4.005107e-30
1.451851e-29
Chromosome 23
175.86058
28
2.292911e-23
5.114955e-23
Chromosome 24
164.63629
28
2.693763e-21
5.579938e-21
Chromosome 26
199.41936
28
8.828351e-28
2.560222e-27
Chromosome 27
105.06293
28
7.536042e-11
1.150238e-10
Chromosome 28
2454.63176
28
9e-41
6.525000e-40
Chromosome 33
250.97814
28
1.085036e-37
5.244341e-37
Chi-squared (χ2) test: Which of the 7 egg production traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first egg
188.6256
6
4.986452e-38
1.745258e-37
Egg number
134.68943
6
1.321401e-26
3.083269e-26
Egg production rate
132.05876
6
4.735891e-26
8.287809e-26
Ovarian follicle weight
15.59319
6
0.0161123
1.611230e-02
Pre-ovulatory follicle number
20.79097
6
0.002000163
2.333524e-03
Qualifying egg number
42.7755
6
1.292036e-07
1.808850e-07
Small yellow follicle number
721.51467
6
1.38321e-152
9.682470e-152
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
10610.430180
Number of traits:
7
df
=
168
Number of QTLs:
1,097
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
