Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
13
Number of QTL / associations found:
1,442
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
3.62596
28
0.998329325823115
9.999718e-01
Chromosome 2
13.84032
28
0.9882832
9.999718e-01
Chromosome 3
97.14120
28
1.464787e-09
2.235728e-09
Chromosome 4
3.62596
28
0.998329325823115
9.999718e-01
Chromosome 5
0.42562
28
0.998329325823115
9.999718e-01
Chromosome 6
209.02960
28
1.323912e-29
2.953342e-29
Chromosome 7
2.80566
28
0.998329325823115
9.999718e-01
Chromosome 8
69.25711
28
2.361934e-05
3.261718e-05
Chromosome 9
918.61146
28
2.246679e-175
6.515369e-174
Chromosome 10
559.86736
28
2.913113e-100
2.816009e-99
Chromosome 11
424.09757
28
2.427186e-72
1.407768e-71
Chromosome 12
325.33540
28
2.202304e-52
7.096313e-52
Chromosome 13
42.32852
28
0.04036424
5.320741e-02
Chromosome 14
141.64059
28
3.866922e-17
6.596514e-17
Chromosome 15
263.12117
28
4.603734e-40
1.213712e-39
Chromosome 16
887.87842
28
6.814803e-169
9.881464e-168
Chromosome 17
73.12461
28
6.732587e-06
9.762251e-06
Chromosome 18
147.14882
28
4.010209e-18
7.268504e-18
Chromosome 19
118.34511
28
4.468891e-13
7.199880e-13
Chromosome 20
230.99076
28
8.154326e-34
1.970629e-33
Chromosome 21
186.71679
28
2.172454e-25
4.500083e-25
Chromosome 22
333.65657
28
4.760146e-54
1.725553e-53
Chromosome 23
333.65657
28
4.760146e-54
1.725553e-53
Chromosome 24
7.27714
28
0.9999718
9.999718e-01
Chromosome 25
433.59069
28
2.805874e-74
2.034259e-73
Chromosome 26
173.00465
28
7.750203e-23
1.498373e-22
Chromosome 27
297.34302
28
8.258504e-47
2.394966e-46
Chromosome 28
392.04828
28
8.001589e-66
3.867435e-65
Chromosome 29
8.56635
28
0.9998464
9.999718e-01
Chi-squared (χ2) test: Which of the 13 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Body capacity
32.16348
12
0.001305625
1.543011e-03
Body circumference
51.22087
12
8.51515e-07
1.229966e-06
Body depth
215.62473
12
1.915439e-39
1.245035e-38
Body height
115.93957
12
3.974657e-19
1.722351e-18
Body length
66.42013
12
1.48787e-09
2.763187e-09
Body weight
98.12503
12
1.295997e-15
4.211990e-15
Body width
24.29823
12
0.01852172
1.852172e-02
Cannon bone circumference
246.8167
12
6.306466e-46
8.198406e-45
Chest width
56.79095
12
8.62154e-08
1.401000e-07
Head width
30.34782
12
0.002474594
2.680810e-03
Hip width
97.57453
12
1.660321e-15
4.316835e-15
Rump length
33.98575
12
0.0006780404
8.814525e-04
Rump width
81.28112
12
2.349927e-12
5.091509e-12
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
6698.101280
Number of traits:
13
df
=
336
Number of QTLs:
1,442
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
