Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of udder traits traits:
11
Number of QTL / associations found:
236
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are udder traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 2
57.18207
26
0.0003963785
7.644443e-04
Chromosome 3
5525.06768
26
9e-41
1.215000e-39
Chromosome 4
57.18207
26
0.0003963785
7.644443e-04
Chromosome 5
66.31768
26
2.244487e-05
1.212023e-04
Chromosome 7
57.18207
26
0.0003963785
7.644443e-04
Chromosome 8
57.18207
26
0.0003963785
7.644443e-04
Chromosome 9
75.40665
26
1.049995e-06
7.087466e-06
Chromosome 10
6.42356
26
0.9999677
9.999999e-01
Chromosome 11
3.81337
26
0.9999999
9.999999e-01
Chromosome 12
17.61001
26
0.8894981
9.999999e-01
Chromosome 13
17.61001
26
0.8894981
9.999999e-01
Chromosome 14
28.28375
26
0.3446387
4.652622e-01
Chromosome 15
0.69047
26
0.998329325823115
9.999999e-01
Chromosome 16
28.28375
26
0.3446387
4.652622e-01
Chromosome 17
17.61001
26
0.8894981
9.999999e-01
Chromosome 18
57.18207
26
0.0003963785
7.644443e-04
Chromosome 19
2810.72440
26
9e-41
1.215000e-39
Chromosome 20
57.18207
26
0.0003963785
7.644443e-04
Chromosome 21
57.18207
26
0.0003963785
7.644443e-04
Chromosome 22
57.18207
26
0.0003963785
7.644443e-04
Chromosome 23
28.28375
26
0.3446387
4.652622e-01
Chromosome 24
75.40665
26
1.049995e-06
7.087466e-06
Chromosome 25
41.47440
26
0.02778702
5.001664e-02
Chromosome 26
17.61001
26
0.8894981
9.999999e-01
Chromosome 27
28.28375
26
0.3446387
4.652622e-01
Chromosome 28
28.28375
26
0.3446387
4.652622e-01
Chromosome 29
57.18207
26
0.0003963785
7.644443e-04
Chi-squared (χ2) test: Which of the 11 udder traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Medial suspensory ligament
81.14086
10
2.998940e-13
8.247085e-13
Teat angle
72.70005
10
1.331280e-11
1.830510e-11
Teat diameter
91.87505
10
2.273376e-15
1.250357e-14
Teat length
114.00005
10
8.308013e-20
9.138814e-19
Teat number
73.92172
10
7.710899e-12
1.413665e-11
Teat placement
86.76177
10
2.343447e-14
8.592639e-14
Teat shape
69.75005
10
4.954774e-11
6.055835e-11
Teat structure
73.19112
10
1.069035e-11
1.679912e-11
Udder attachment
74.23011
10
6.71685e-12
1.413665e-11
Udder depth
47.78134
10
6.804055e-07
6.804055e-07
Udder width
58.45462
10
7.097404e-09
7.807144e-09
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
9331.822280
Number of traits:
11
df
=
260
Number of QTLs:
236
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
