Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of udder traits traits:
17
Number of QTL / associations found:
4,144
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are udder traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3106.10400
29
9e-41
1.687500e-40
Chromosome 1
11.98092
29
0.997761
9.983293e-01
Chromosome 2
343.96508
29
1.444694e-55
3.611735e-55
Chromosome 3
143.38633
29
4.349931e-17
6.524897e-17
Chromosome 4
77.74117
29
2.467779e-06
3.084724e-06
Chromosome 5
2547.24549
29
9e-41
1.687500e-40
Chromosome 6
2075.61024
29
9e-41
1.687500e-40
Chromosome 7
370.48236
29
6.830205e-61
1.862783e-60
Chromosome 8
588.20051
29
1.800678e-105
6.752542e-105
Chromosome 9
160.68179
29
3.468955e-20
5.477297e-20
Chromosome 10
1431.94043
29
1.753703e-283
5.261109e-282
Chromosome 11
993.91146
29
1.673502e-190
1.673502e-189
Chromosome 12
297.10016
29
3.043675e-46
7.023865e-46
Chromosome 13
141.15474
29
1.078033e-16
1.540047e-16
Chromosome 14
830.21268
29
5.219317e-156
2.236850e-155
Chromosome 15
415.91146
29
4.406668e-70
1.322000e-69
Chromosome 16
24.58319
29
0.6996841
8.073278e-01
Chromosome 17
550.26229
29
1.271003e-97
4.236677e-97
Chromosome 18
97.40762
29
2.531798e-09
3.302345e-09
Chromosome 19
1.20819
29
0.998329325823115
9.983293e-01
Chromosome 20
48.57359
29
0.01280641
1.536769e-02
Chromosome 21
0.09248
29
0.998329325823115
9.983293e-01
Chromosome 22
198.22612
29
4.007345e-27
6.678908e-27
Chromosome 23
97.40762
29
2.531798e-09
3.302345e-09
Chromosome 24
913.04654
29
1.935314e-173
1.451486e-172
Chromosome 25
1137.36120
29
7.291631e-221
1.093745e-219
Chromosome 26
12.63729
29
0.9963934
9.983293e-01
Chromosome 27
228.96892
29
5.801916e-33
1.023868e-32
Chromosome 28
830.21268
29
5.219317e-156
2.236850e-155
Chromosome 29
871.13729
29
1.295324e-164
7.771944e-164
Chi-squared (χ2) test: Which of the 17 udder traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Teat length
93.98926
16
4.577733e-13
2.594049e-12
Teat number
449.06084
16
1.810777e-85
3.078321e-84
Teat placement
66.66771
16
3.796903e-08
9.221050e-08
Teat structure
52.32891
16
9.692343e-06
1.497908e-05
Teat thickness
22.32536
16
0.1329934
1.507259e-01
Udder attachment
55.39112
16
3.066555e-06
5.213143e-06
Udder balance
77.09624
16
5.527783e-10
1.879446e-09
Udder capacity
20.69633
16
0.1904808
2.023859e-01
Udder cleft
74.61533
16
1.530479e-09
4.336357e-09
Udder composite index
85.02236
16
2.044563e-11
8.689393e-11
Udder depth
32.04366
16
0.009869738
1.198468e-02
Udder height
57.19396
16
1.543174e-06
2.914884e-06
Udder quality
14.46268
16
0.5642867
5.642867e-01
Udder structure
43.61143
16
0.0002259289
3.200659e-04
Udder swelling score
122.91579
16
1.507722e-18
1.281564e-17
Udder texture
41.10887
16
0.0005350996
6.997456e-04
Udder width
60.34462
16
4.578332e-07
9.728955e-07
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
18546.753840
Number of traits:
17
df
=
464
Number of QTLs:
4,144
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
