Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of udder traits traits:
17
Number of QTL / associations found:
4,211
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are udder traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3362.85925
29
9e-41
1.687500e-40
Chromosome 1
11.23921
29
0.9987596
9.987596e-01
Chromosome 2
335.51098
29
7.088887e-54
1.772222e-53
Chromosome 3
160.17400
29
4.287211e-20
6.769281e-20
Chromosome 4
55.29148
29
0.002290611
2.748733e-03
Chromosome 5
2498.59234
29
9e-41
1.687500e-40
Chromosome 6
2195.28106
29
9e-41
1.687500e-40
Chromosome 7
335.51098
29
7.088887e-54
1.772222e-53
Chromosome 8
549.63584
29
1.712084e-97
6.420315e-97
Chromosome 9
151.48632
29
1.572638e-18
2.358957e-18
Chromosome 10
1377.11713
29
8.320239e-272
2.496072e-270
Chromosome 11
1016.93201
29
2.284288e-195
2.284288e-194
Chromosome 12
319.55648
29
1.074683e-50
2.480038e-50
Chromosome 13
121.19232
29
3.089722e-13
4.413889e-13
Chromosome 14
821.65199
29
3.280391e-154
1.405882e-153
Chromosome 15
426.84501
29
2.638108e-72
7.914324e-72
Chromosome 16
32.44178
29
0.3008205
3.471006e-01
Chromosome 17
537.73465
29
4.897605e-95
1.632535e-94
Chromosome 18
77.93123
29
2.316565e-06
3.021607e-06
Chromosome 19
2.30928
29
0.998329325823115
9.987596e-01
Chromosome 20
62.04150
29
0.0003418687
4.273359e-04
Chromosome 21
0.22627
29
0.998329325823115
9.987596e-01
Chromosome 22
197.34705
29
5.861157e-27
9.768595e-27
Chromosome 23
84.19675
29
2.769838e-07
3.777052e-07
Chromosome 24
945.71850
29
2.499204e-180
1.874403e-179
Chromosome 25
1148.16827
29
3.727748e-223
5.591622e-222
Chromosome 26
15.64765
29
0.97928
9.987596e-01
Chromosome 27
249.26352
29
7.078806e-37
1.249201e-36
Chromosome 28
862.03855
29
1.063486e-162
5.317430e-162
Chromosome 29
862.03855
29
1.063486e-162
5.317430e-162
Chi-squared (χ2) test: Which of the 17 udder traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Teat length
94.3638
16
3.900543e-13
2.210308e-12
Teat number
453.20535
16
2.430515e-86
4.131876e-85
Teat placement
70.72499
16
7.446592e-09
1.808458e-08
Teat structure
52.27231
16
9.89877e-06
1.529810e-05
Teat thickness
22.23206
16
0.1358555
1.539696e-01
Udder attachment
55.98312
16
2.449245e-06
4.163716e-06
Udder balance
88.66017
16
4.413031e-12
1.875538e-11
Udder capacity
20.81868
16
0.1855861
1.971852e-01
Udder cleft
74.79994
16
1.419131e-09
4.020871e-09
Udder composite index
78.55447
16
3.028312e-10
1.029626e-09
Udder depth
32.73887
16
0.008001582
9.716207e-03
Udder height
58.04161
16
1.114889e-06
2.105901e-06
Udder quality
14.31274
16
0.5754277
5.754277e-01
Udder structure
43.01432
16
0.0002780659
3.939267e-04
Udder swelling score
120.07606
16
5.310949e-18
4.514307e-17
Udder texture
41.50806
16
0.0004670122
6.107083e-04
Udder width
60.99797
16
3.550597e-07
7.545019e-07
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
18815.979950
Number of traits:
17
df
=
464
Number of QTLs:
4,211
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
