Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
20
Number of QTL / associations found:
3,866
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1907.61780
29
9e-41
1.687500e-40
Chromosome 1
1260.84080
29
4.495994e-247
6.743991e-246
Chromosome 2
1346.16940
29
3.215795e-265
9.647385e-264
Chromosome 3
1.52380
29
0.998329325823115
9.999996e-01
Chromosome 4
19.23720
29
0.9150532
9.804141e-01
Chromosome 5
225.68300
29
2.472741e-32
4.121235e-32
Chromosome 6
8507.77300
29
9e-41
1.687500e-40
Chromosome 7
2277.28160
29
9e-41
1.687500e-40
Chromosome 8
199.65100
29
2.162546e-27
3.089351e-27
Chromosome 9
210.93920
29
1.594750e-29
2.392125e-29
Chromosome 10
167.64900
29
1.873446e-21
2.554699e-21
Chromosome 11
1848.43520
29
9e-41
1.687500e-40
Chromosome 12
3592.01520
29
9e-41
1.687500e-40
Chromosome 13
5.34160
29
0.9999996
9.999996e-01
Chromosome 14
561.20300
29
6.972626e-100
2.324209e-99
Chromosome 15
29.84240
29
0.4219024
4.687804e-01
Chromosome 16
49.54240
29
0.01011257
1.213508e-02
Chromosome 17
31.00120
29
0.3653678
4.215782e-01
Chromosome 18
157.60240
29
1.250507e-19
1.631096e-19
Chromosome 19
112.02560
29
1.069245e-11
1.336556e-11
Chromosome 20
259.19580
29
8.323368e-39
1.468830e-38
Chromosome 21
824.03800
29
1.034591e-154
7.759433e-154
Chromosome 22
222.53760
29
9.879194e-32
1.559873e-31
Chromosome 23
801.57540
29
5.380615e-150
3.228369e-149
Chromosome 24
736.05040
29
2.889016e-136
1.238150e-135
Chromosome 25
757.58160
29
8.992645e-141
4.496323e-140
Chromosome 26
433.76380
29
1.029688e-73
3.089064e-73
Chromosome 27
693.91900
29
1.840276e-127
6.901035e-127
Chromosome 28
1117.79900
29
1.021335e-216
1.021335e-215
Chromosome 29
340.89260
29
5.95222e-55
1.623333e-54
Chi-squared (χ2) test: Which of the 20 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Channel fat weight
16.41443
19
0.629473
6.294730e-01
Fat area to ribeye area ratio
22.20469
19
0.2741879
3.427349e-01
Fat cover
75.58723
19
1.058225e-08
3.527417e-08
Fat percentage
45.76685
19
0.0005347186
1.336797e-03
Fat trim yield
43.36204
19
0.001156367
2.569704e-03
Fat weight
57.64058
19
9.0833e-06
2.595229e-05
Intermuscular fat percentage
27.13179
19
0.1016206
1.628041e-01
Internal fat weight
26.97788
19
0.1051694
1.628041e-01
Intramuscular fat
152.20401
19
8.226745e-23
5.484497e-22
Kidney fat weight
91.35868
19
1.903857e-11
7.615428e-11
Kidney, pelvic, and heart fat percentage
95.15434
19
3.999205e-12
1.999602e-11
Kidney, pelvic, and heart fat weight
24.50454
19
0.1775051
2.366735e-01
Marbling score
202.03462
19
1.340425e-32
1.340425e-31
Meat fat content
20.51433
19
0.3642458
4.285245e-01
Pericardial fat weight
26.6143
19
0.1139629
1.628041e-01
Rib fat
33.04618
19
0.02374698
4.749396e-02
Sirloin fat depth
19.80235
19
0.4065586
4.294922e-01
Skinfold thickness
26.92797
19
0.1063421
1.628041e-01
Subcutaneous fat percentage
19.77847
19
0.4080176
4.294922e-01
Subcutaneous fat thickness
439.1344
19
3.068681e-81
6.137362e-80
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
28698.728000
Number of traits:
20
df
=
551
Number of QTLs:
3,866
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
