Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of conformation traits:
24
Number of QTL / associations found:
4,620
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are conformation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
14497.40256
29
9e-41
1.687500e-40
Chromosome 1
89.76624
29
3.95458e-08
5.158148e-08
Chromosome 2
9.97392
29
0.9996098
9.996098e-01
Chromosome 3
0.15576
29
0.998329325823115
9.996098e-01
Chromosome 4
89.76624
29
3.95458e-08
5.158148e-08
Chromosome 5
5566.90920
29
9e-41
1.687500e-40
Chromosome 6
3459.89616
29
9e-41
1.687500e-40
Chromosome 7
785.61048
29
1.202058e-146
5.151677e-146
Chromosome 8
105.35064
29
1.338606e-10
2.007909e-10
Chromosome 9
68.72736
29
4.518467e-05
5.648084e-05
Chromosome 10
1022.49360
29
1.523983e-196
1.142987e-195
Chromosome 11
3841.40256
29
9e-41
1.687500e-40
Chromosome 12
638.33760
29
7.018861e-116
2.632073e-115
Chromosome 13
22.44144
29
0.8014619
8.587092e-01
Chromosome 14
261.97392
29
2.393421e-39
4.223684e-39
Chromosome 15
1406.49360
29
4.620494e-278
1.386148e-276
Chromosome 16
159.58440
29
5.481479e-20
9.135798e-20
Chromosome 17
89.76624
29
3.95458e-08
5.158148e-08
Chromosome 18
359.06496
29
1.352814e-58
4.058442e-58
Chromosome 19
45.03888
29
0.02916912
3.500294e-02
Chromosome 20
39.89616
29
0.08564906
9.516562e-02
Chromosome 21
113.61048
29
5.827431e-12
9.201207e-12
Chromosome 22
807.89616
29
2.536467e-151
1.268234e-150
Chromosome 23
405.35064
29
6.128377e-68
2.042792e-67
Chromosome 24
1784.25984
29
9e-41
1.687500e-40
Chromosome 25
807.89616
29
2.536467e-151
1.268234e-150
Chromosome 26
39.89616
29
0.08564906
9.516562e-02
Chromosome 27
1022.49360
29
1.523983e-196
1.142987e-195
Chromosome 28
1784.25984
29
9e-41
1.687500e-40
Chromosome 29
1152.62328
29
4.23368e-224
6.350520e-223
Chi-squared (χ2) test: Which of the 24 conformation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Angularity
44.38866
23
0.004718947
5.960775e-03
Anogenital distance
34.55181
23
0.05758914
6.282452e-02
Body condition score
317.59773
23
1.251429e-53
1.001143e-52
Body form composite index
111.07437
23
1.629275e-13
4.887825e-13
Bone quality
77.07133
23
9.39894e-08
1.735189e-07
Conformation score
139.78025
23
1.017193e-18
4.068772e-18
Dairy capacity composite index
189.27126
23
4.204979e-28
2.522987e-27
Dairy form
109.54878
23
3.030724e-13
8.081931e-13
Dairy strength
53.91571
23
0.0002749408
3.665877e-04
Dairy type
356.69967
23
1.357314e-61
1.628777e-60
Ear length
37.99157
23
0.0255249
2.917131e-02
Ear size
387.76562
23
5.827052e-68
1.398492e-66
Hindquarter proportions
22.76443
23
0.4745954
4.952300e-01
Locomotion
64.61216
23
8.01432e-06
1.282291e-05
Loin strength
41.1002
23
0.01153373
1.384048e-02
Muscularity
65.89405
23
5.146179e-06
8.822021e-06
PTA type
61.37138
23
2.414518e-05
3.621777e-05
Presence of horns
99.82021
23
1.512148e-11
3.629155e-11
Rump angle
115.64452
23
2.510027e-14
8.605807e-14
Rump conformation
85.64252
23
3.784436e-09
8.256951e-09
Stature
80.91494
23
2.256007e-08
4.512014e-08
Structural soundness
59.45965
23
4.571636e-05
6.454074e-05
Tail circumference
21.94321
23
0.5236824
5.236824e-01
Tail length
174.51092
23
2.905117e-25
1.394456e-24
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
40478.338080
Number of traits:
24
df
=
667
Number of QTLs:
4,620
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
