Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of semen quality traits:
15
Number of QTL / associations found:
3,857
Number of chromosomes where QTL / associations are found:
28
Chi-squared (χ2) test: are semen quality traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1312869.69825
27
9e-41
9.000000e-41
Chromosome 1
1335.63300
27
1.133061e-264
1.586285e-263
Chromosome 2
1614.12660
27
9e-41
9.000000e-41
Chromosome 3
1890.17010
27
9e-41
9.000000e-41
Chromosome 4
1749.42600
27
9e-41
9.000000e-41
Chromosome 5
1777.13925
27
9e-41
9.000000e-41
Chromosome 6
1458.95415
27
5.677267e-291
1.589635e-289
Chromosome 7
1561.53135
27
9e-41
9.000000e-41
Chromosome 8
1749.42600
27
9e-41
9.000000e-41
Chromosome 9
1918.97235
27
9e-41
9.000000e-41
Chromosome 10
1890.17010
27
9e-41
9.000000e-41
Chromosome 11
1721.93055
27
9e-41
9.000000e-41
Chromosome 12
1977.23010
27
9e-41
9.000000e-41
Chromosome 13
2006.68560
27
9e-41
9.000000e-41
Chromosome 14
2036.35890
27
9e-41
9.000000e-41
Chromosome 15
1918.97235
27
9e-41
9.000000e-41
Chromosome 16
1977.23010
27
9e-41
9.000000e-41
Chromosome 17
1667.59305
27
9e-41
9.000000e-41
Chromosome 20
1977.23010
27
9e-41
9.000000e-41
Chromosome 21
1918.97235
27
9e-41
9.000000e-41
Chromosome 22
1805.07030
27
9e-41
9.000000e-41
Chromosome 23
1694.65290
27
9e-41
9.000000e-41
Chromosome 24
1890.17010
27
9e-41
9.000000e-41
Chromosome 25
1721.93055
27
9e-41
9.000000e-41
Chromosome 26
1861.58580
27
9e-41
9.000000e-41
Chromosome 27
1694.65290
27
9e-41
9.000000e-41
Chromosome 28
1947.99225
27
9e-41
9.000000e-41
Chromosome 29
1977.23010
27
9e-41
9.000000e-41
Chi-squared (χ2) test: Which of the 15 semen quality traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Percentage abnormal sperm
879.5523
14
1.036703e-178
6.422710e-178
Percentage live sperm after osmotic stress
295.69233
14
9.345856e-55
1.752348e-54
Percentage live sperm after thawing
294.6923
14
1.510103e-54
2.516838e-54
Percentage normal sperm
232.9365
14
9.575359e-42
1.436304e-41
Semen volume
926.81233
14
7.75078e-189
1.162617e-187
Sperm DNA fragmentation
2253.22158
14
9e-41
1.125000e-40
Sperm acrosome integrity rate
225.67014
14
3.000477e-40
3.462089e-40
Sperm average path velocity
320.41669
14
6.4513e-60
1.382421e-59
Sperm concentration
879.11767
14
1.284542e-178
6.422710e-178
Sperm head abnormalities
157.08502
14
2.733688e-26
2.733688e-26
Sperm motility
2025.04494
14
9e-41
1.125000e-40
Sperm plasma membrane integrity
522.95454
14
1.256544e-102
3.141360e-102
Sperm progressive motility
523.58504
14
9.234087e-103
2.770226e-102
Sperm tail abnormalities
174.31821
14
9.170982e-30
9.826052e-30
sperm counts
640.89506
14
1.039436e-127
3.897885e-127
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
28
χ2
=
1361610.735150
Number of traits:
15
df
=
378
Number of QTLs:
3,857
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
