Release 56
(Apr 24, 2025)

Whole genome analysis for QTL/association enrichment

Running...
Version: Enrich S: beta v0.8
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Data:

Number of carcass quality traits:6
Number of QTL / associations found:153
Number of chromosomes where QTL / associations are found:27

Chi-squared (χ2) test: are carcass quality traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome 11.88238260.9983293258231159.999893e-01
Chromosome 2974.23530261.070463e-1882.890250e-187
Chromosome 37.52940260.9998469.999893e-01
Chromosome 42.94120260.9983293258231159.999893e-01
Chromosome 573.52940262.005130e-062.706926e-05
Chromosome 67.52940260.9998469.999893e-01
Chromosome 72.94120260.9983293258231159.999893e-01
Chromosome 814.23530260.9697689.999893e-01
Chromosome 92.94120260.9983293258231159.999893e-01
Chromosome 101.88238260.9983293258231159.999893e-01
Chromosome 115.76468260.99998939.999893e-01
Chromosome 127.52940260.9998469.999893e-01
Chromosome 130.47058260.9983293258231159.999893e-01
Chromosome 141.88238260.9983293258231159.999893e-01
Chromosome 1523.05884260.62961619.999893e-01
Chromosome 165.76468260.99998939.999893e-01
Chromosome 1723.05884260.62961619.999893e-01
Chromosome 180.47058260.9983293258231159.999893e-01
Chromosome 192.94120260.9983293258231159.999893e-01
Chromosome 2011.76468260.9924229.999893e-01
Chromosome 212.94120260.9983293258231159.999893e-01
Chromosome 2214.23530260.9697689.999893e-01
Chromosome 2423.05884260.62961619.999893e-01
Chromosome 2514.23530260.9697689.999893e-01
Chromosome 262.94120260.9983293258231159.999893e-01
Chromosome 2814.23530260.9697689.999893e-01
Chromosome 297.52940260.9998469.999893e-01

Chi-squared (χ2) test: Which of the 6 carcass quality traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Carcass conformation score 23.37702 5 0.0002858981 0.0005717962
Cutability 5.5893 5 0.3482531 0.3482531000
Dressing percentage 24.3092 5 0.0001893318 0.0005679954
Quality grade 16.69556 5 0.005114875 0.0076723125
Retail product yield 32.09592 5 5.686983e-06 0.0000341219
Yield grade 14.92108 5 0.01070493 0.0128459160

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:27 χ2=1251.529560
Number of traits:6 df=130
Number of QTLs:153 p-value=1.404341e-182

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team