NAGRP Blast Center

Start with a sequence database:

Aqua Species:
  1. All Marine Species ESTs
  2. Altlanta Salmon TIGR Indices
  3. Catfish TIGR Indices
  4. Catfish genome
  5. Rainbow trout genome assembly
  6. Rainbow Trout TIGR Indices
  7. Rainbow Trout EST Contigs (WV)
  8. Rainbow Trout EST Singleton (WV)
  9. Vannamei (shrimp) ESTs
  10. Zibrafish Genome (by chromosome)
Cattle:
  1. Genome (ARS_UCD1.2)
  2. Genome (ARS_UCD1.2) (megablast)
  3. Genome (MD 3.1)
  4. RefSeq
  5. SNP db (BMC data)
  6. SNP db (NCBI data)
  7. TIGR Indices
  8. UniGene
Chicken:
  1. Genome (by chromosome)
  2. SNP db (NCBI data)
  3. TIGR Indices
  4. UniGene
Pigs:
  1. Genome v.11.1
  2. Genome v.10.2
  3. Genome v.9b
  4. Pig Oligo Array sequences (1, 2)
  5. SNP db (NCBI data)
  6. TIGR Indices
  7. UniGene
Sheep:
  1. Genome (OAR 3.1)
  2. SNP db (NCBI data)
  3. UniGene
Horse:
  1. Horse (EquCab2.0)
  2. Horse (EquCab3.0)
Human:
  1. Genome (by chromosome)
  2. RefSeq
  3. UniGene
Common sequences:
  1. WGS Genomic Sequences
  2. Mammalian RefSeq
  3. Sequence Taged Sites
  4. Gene Ontology Sequences

Start with a blast program:

  1. Regular BLAST
  2. Mega BLAST
  3. BLAST 2 sequences

Help Desk:

  • Need to do batch blast and data mining?
  • Need to add a specific sequence set?
  •   Contact us

Documentations

Local info
Usage history:
Year Month Usage
2010May99
Jun878
Jul302
Aug480
Sep607
Oct7,001
Nov501
Dec283
2011Jan1,917
Feb13,273
Mar21,782
Apr300
May372
Jun284
Jul240
Aug179
Sep543
Oct359
Nov527
Dec236
2012Jan161
Feb95
Mar167
Apr138
May197
Jun101
Jul63
Aug56
Sep45
Oct197
Nov111
Dec48
2013Jan127
Feb101
Mar69
Apr62
May381
Jun150
Jul95
Aug146
Sep308
Oct343
Nov129
Dec154
2014Jan377
Feb738
Mar302
Apr148
May114
Jun156
Jul52
Aug133
Sep186
Oct201
Nov105
Dec70
2015Jan150
Feb102
Mar118
Apr71
May73
Jun90
Jul64
Aug60
Sep159
Oct129
Nov28
Dec102
2016Jan61
Feb118
Mar75
Apr53
May22
Jun47
Jul16
2017Mar6
Apr14
May83
Jun26
Jul36
Aug7
Sep18
Oct21
Nov6
Dec84
2018Jan15
Feb15
Mar7
Apr15
May24
Jun19
Jul19
Aug42
Sep7
Oct24
Nov13
Dec1
2019Jan23
Feb32
Mar4
Apr15
May7
Jun15
Jul22
Aug8
Sep3
Oct4
Nov9
Dec6
2020Jan6
Feb5
Mar15
Apr5
May3
Jun21
Jul2
Aug3
Sep7
Oct3
Nov16
Dec2
2021Feb18
Mar15
Total:14,567
Available sequence databases:
All sequences are from public databases (such as NCBI and Ensembl) or from publicly available data resources (such as BMC and Sanger). The sequence databases are periodically updated on daily or weekly basis depending on how frequently the data source are changed.
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