Data sets available for blast at the NAGRP Blast Center

Nucleotide Sequence Databases


Refseq Sequences, genomic
Refseq genomics sequence 6448 in total (updated Apr. 4, 2007)
Human Genome Sequences - by chromosomes
Huamn genomics sequence in 368 fragments (updated Dec. 7, 2006)
Cattle Genome Sequences - by chromosomes
Cattle genomics sequence in 102,340 fragments (updated June 21, 2007)
Cattle Genome Sequences - raw
Cattle genomics sequence in 321,107 fragments (updated July 21, 2005)
Cattle SNP Database (TMC Data)
130,915 cattle SNP data combined from 2004 data (3x genome coverage sequences) and 2005 data (6x genome coverage sequences) produced by the Texas Medical Center (ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Btaurus/snp)
Chicken Genome Sequences - by chromosomes
Chicken genomics sequence in 40,216 fragments (updated Nov. 16, 2006)
Pig (Genome) Raw Trace Sequences
5.1 million Pig sequences including ~3.8 million fragments from Sino-Danish project representing 0.66x coverage of the pig genome (updated July 2, 2005)
EST_other
All non-human, non-mouse EST from Genback. Data source: ftp://ftp.ncbi.nih.gov/blast/db/FASTA/est_others.gz
Data updated daily.
Whole Genome Shortgun (WGS)
Whole Genome Shotgun sequences for all species. Data source: ftp://ftp.ncbi.nih.gov/blast/db/FASTA/wgs.gz
Data updated daily.
TIGR Indices: Cattle
Data source: http://www.tigr.org/ ; Data updated weekly.
TIGR Indices: Chicken
Data source: http://www.tigr.org/ ; Data updated weekly.
TIGR Indices: Pig
Data source: http://www.tigr.org/ ; Data updated weekly.
TIGR Indices: Altlanta Salmon
Data source: http://www.tigr.org/ ; Data updated weekly.
TIGR Indices: Catfish
Data source: http://www.tigr.org/ ; Data updated weekly.

TIGR Indices: Rainbow Trout
Data source: http://www.tigr.org/ ; Data updated weekly.
UniGene: Huamn
Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Hs.seq.uniq.gz ; Data updated daily.

UniGene: Cattle
Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Bt.seq.uniq.gz ; Data updated daily.
UniGene: Chicken
Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Gga.seq.uniq.gz ; Data updated daily.
UniGene: Pigs
Data source: ftp://ftp.ncbi.nih.gov/repository/UniGene/Ssc.seq.uniq.gz ; Data updated daily.

 

Protein Sequence Databases


Gene Ontology protein sequences
Annotated known gene sequences from Gene Ontology. Data source: http://www.geneontology.org/
Data updated occasionally or upon requests.



Web Access Statistics © 2003-2018 NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team
Helpdesk