National Animal Genome Research - Bioinformatics Coordination Program
Dell Dual Quad Core Xeon Red Hat Enterprise Linux 5
(Commissioned 23:07:31 PM, Sep 02, 2009)

CPU: 1.8625% full (14.9 out of 800)
RAM: 6.8% full
Welcome to NAGRP Animal Genome Server

Capacity:

  1. Dell PowerEdge 2950, 2U, Datacenter x64 Edition,
  2. Red Hat Enterprise Linux 5, SUSE Linux Enterprise Server 10,
  3. CPU: 2 x Quad Core Xeon E5420 (8 Processor), 2x6MB Cache, 2.5GHz
  4. RAM: 32GB 667MHz (8 slots x4GB)
  5. Main HD: 2 x 450GB disks in raid-1 (400GB useable).
  6. Storage: 4 x 450GB disks in raid-5 (1.3TB useble).

An ad hoc list of software installed and new functions on this server:

  1. MySQL installed (Aug. 18, 2004)
    1. Crittenden Genomics References now managed with MySQL (Apr. 17, 2005)
    2. ANGENMAP mails archive ported to MySQL for search (May 12, 2005)
    3. AquaGenomics Community Directory and Publication Archives (Feb. 19, 2006)
  2. MySQL Browser (Oct. 15, 2004)
  3. NAGRP Blast server (Nov. 1, 2004)
    1.  TIGR Indices sequences are available for blast for the following species: Cattle, Pigs, Chicken, Catfish, Salmon, Rainbow trout (February 25, 2005)
    2. Gene Ontology sequences database for blast (Mar. 16, 2005)
    3.  UniGene sequences are available for blast for the following species: human, cattle, chicken, pigs (April 6, 2005)
    4. Cattle Genome Sequences for blast (June 17, 2005)
    5. Pig Genome Sequences for blast (July 7, 2005)
    6. Blast Query the Bovine SNP Database (Jan 27, 2006)
  4. Postgres server (Dec. 10, 2004)
    1. Animal Trait Ontology (ATO) being developed on Postgres (Dec. 28, 2005)
    2. Collaborative Ontology Editor (COB) is connected to ATO on postgres (Jan. 2, 2006)
  5. Pig QTL database (Dec. 20, 2004)
    1. QTLdb Curator/Editor Tools (Jun. 8, 2005)
    2. PigQTLdb Extension: Comparitive Mapping with RH data to human maps (Dec. 15, 2005)
    3. PigQTLdb Extension: QTL Alignment with Pig BACend Sequences FPC Maps (Jan. 3, 2006)
    4. The QTLdb tool has been extended to include QTL data from cattle and chicken (Aug. 15, 2006)
  6. GBrowse (Jan. 30, 2005)
  7.  Bioperl installed (Feb. 17, 2005)
  8. Apache/PHP servers are installed (Nov. 24, 2004)
    1. NAGRP web sites for pig and cattle are moved to this server (Jul. 30, 2005)
    2. NAGRP web sites for sheep is established (Feb. 21, 2007)
  9. Genetic Analysis Software Database (Oct. 19, 2005)
  10. NAGRP Bioinformatics Tool Box established (Mar. 19, 2006)

Contact: NAGRP Bioinfo Team

Last modified: Apr 03 2018 09:59