Pig QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2018-08-15
Updated: 2024-04-23

Publication # 30081822 Details

Authors:	Marques DBD, Bastiaansen JWM, Broekhuijse MLWJ, Lopes MS, Knol EF, Harlizius B, Guimarães SEF, Silva FF, Lopes PS (Contact: john.bastiaansen@wur.nl)
Affiliation:	Animal Science Department, Universidade Federal de Viçosa, Viçosa, MG, 36.570-000, Brazil
Title:	Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs
Journal:	Genetics, Selection, Evolution : GSE, 50(1): 40 (2018)	DOI: 10.1186/s12711-018-0412-z
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Sperm motility reported for chromosome(s): Chr.1: QTL:160623, QTL:160626, QTL:160628, QTL:160667. Chr.4: QTL:160633, QTL:160636, QTL:160638. Chr.5: QTL:160641. Chr.6: QTL:160643. Chr.7: QTL:160673, QTL:160675. Chr.8: QTL:160645, QTL:160677. Chr.9: QTL:160679, QTL:160680. Chr.10: QTL:160650. Chr.11: QTL:160682. Chr.12: QTL:160654, QTL:160655. Chr.13: QTL:160657, QTL:160685. Chr.14: QTL:160659, QTL:160663. Chr.15: QTL:160665. QTL for Sperm progressive motility reported for chromosome(s): Chr.1: QTL:160624, QTL:160668. Chr.2: QTL:160670. Chr.3: QTL:160671. Chr.4: QTL:160634, QTL:160637, QTL:160639. Chr.5: QTL:160642. Chr.6: QTL:160644. Chr.7: QTL:160676. Chr.8: QTL:160646, QTL:160678. Chr.9: QTL:160647, QTL:160681. Chr.10: QTL:160651. Chr.11: QTL:160683. Chr.12: QTL:160656. Chr.13: QTL:160658. Chr.14: QTL:160660, QTL:160664. QTL for Sperm abnormality rate reported for chromosome(s): Chr.1: QTL:160625, QTL:160627, QTL:160629. Chr.3: QTL:160631, QTL:160632. Chr.4: QTL:160635, QTL:160640. Chr.6: QTL:160672. Chr.7: QTL:160674. Chr.9: QTL:160649. Chr.10: QTL:160653. Chr.13: QTL:160684. Chr.14: QTL:160661. Chr.15: QTL:160686. QTL for Sperm per ejaculate reported for chromosome(s): Chr.1: QTL:160630, QTL:160666. Chr.2: QTL:160669. Chr.9: QTL:160648. Chr.10: QTL:160652. Chr.14: QTL:160662. Chr.18: QTL:160687. QTL/association Reported by chromosomes: Chr.1 (11), Chr.2 (2), Chr.3 (3), Chr.4 (8), Chr.5 (2), Chr.6 (3), Chr.7 (4), Chr.8 (4), Chr.9 (6), Chr.10 (4), Chr.11 (2), Chr.12 (3), Chr.13 (4), Chr.14 (6), Chr.15 (2), Chr.18 (1). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Marques DBD, Bastiaansen JWM, Broekhuijse MLWJ, Lopes MS, Knol EF, Harlizius B, Guimarães SEF, Silva FF, Lopes PS (2018). Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs. Genetics, Selection, Evolution : GSE, 50(1): 40; Curated into QTLdb on 2018-08-16. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=VwGw5G1AaM

Marques DBD, Bastiaansen JWM, Broekhuijse MLWJ, Lopes MS, Knol EF, Harlizius B, Guimarães SEF, Silva FF, Lopes PS (2018). Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs. Genetics, Selection, Evolution : GSE, 50(1): 40; DOI: https://dx.doi.org/10.1186/s12711-018-0412-z

Publication # 30081822 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: