Query the Bovine SNP DatabaseDATA SOURCE: The 114,958 cattle SNPs data were combined from 3x genome coverage sequences (Sep 2004) and 6x genome coverage sequences (Oct 2005) produced by the Baylor College of Medicine-Human Genome Sequencing Center (BCM-HGSC). (Data available from its FTP site: ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Btaurus/snp)
You can blast your sequences against the BCM-HGSC SNP flanking sequences to find if your sequence contains any of the SNP regions, and their chromosomal locations, etc.
Step 2: Retrieve details of a SNP from the BCM-HGSC Bovine SNPs database
NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team