HISAT2 index of pig genome build 11
Data Repository
Name Size Time Last Modified
Sscrofa11.1.fa.gz 693.68 MB2018-04-26 08:40:21
Sscrofa11.idx.1.ht2.gz 578.1 MB2018-04-26 08:39:55
Sscrofa11.idx.2.ht2.gz 573.53 MB2018-04-26 08:39:30
Sscrofa11.idx.3.ht2.gz 2.16 KB2018-04-26 08:39:24
Sscrofa11.idx.4.ht2.gz 547.84 MB2018-04-26 08:39:24
Sscrofa11.idx.5.ht2.gz 936.25 MB2018-04-26 08:39:39
Sscrofa11.idx.6.ht2.gz 583.8 MB2018-04-26 08:39:46
Sscrofa11.idx.7.ht2.gz 43 B2018-04-26 08:39:59
Sscrofa11.idx.8.ht2.gz 43 B2018-04-26 08:39:40
The NAGRP Data Repository: 9 data files at this location

HISAT2 index of pig genome build 11.1

The Sscrofa 11.1 genome downloaded from NCBI is indexed with HISAT2 (version 2.1.0; https://ccb.jhu.edu/software/hisat2/index.shtml) with the default settings. > hisat2-build Sscrofa11.fa Sscrofa11.idx References: - Sscrofa genome build 11.1: https://www.ncbi.nlm.nih.gov/assembly/GCA_000003025.6/ - Kim D, Langmead B and Salzberg SL. HISAT (2015). "A fast spliced aligner with low memory requirements". Nature Methods. 2015 Apr; 12(4):357-60.
 
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