Pig Genome Data Repository
Data Repository
Name Size Time Last Modified
Annot.exon.build10.README 1.07 KB2011-04-20 09:03:09
Annot.exon.build10.gff.gz 2.01 MB2011-04-14 15:28:02
Annot.exon.build10.txt.gz 3.99 MB2011-01-26 16:19:34
Build.10_chr.ref_Groenen-lab.README 2.26 KB2011-04-20 10:17:10
Build.10_chr.ref_Groenen-lab.fa.gz 673.92 MB2011-04-15 09:11:19
Genome_10.2_annotations 66 files2015-08-05 14:32:48
Genome_10.2_mappings 6 files2017-03-29 22:05:42
Genome_10.2f 22 files2017-09-07 11:32:48
Genome_11.1 42 files2017-09-07 11:34:30
Genome_9.2 40 files2017-09-07 11:34:59
Multiple_Oligo_Comparison_Data 25 files2017-08-17 21:21:30
Pig60K_SNP_README 728 B2014-07-07 09:56:34
Pig60K_SNP_pos_build10.2.txt.gz 525.93 KB2014-07-07 09:53:53
Pig60K_SNP_pos_build10.txt.gz 548.6 KB2010-09-30 12:33:46
Pig60K_SNP_pos_build9.txt.gz 19.42 KB2013-06-27 10:02:48
Pig60K_SNP_ss_rsNumbers.zip 417.45 KB2012-12-31 09:06:21
Pig70K_SNP_annotations.README 1.85 KB2015-05-15 09:27:28
Pig70K_SNP_annotations.csv.gz 6.81 MB2014-01-09 02:36:40
PorcineSNP60_Ensembl_76_vep.txt.gz 1.6 MB2015-02-05 20:40:31
SGSC_consortium_2008-2012 0 file2017-08-17 20:29:49

The NSPR-8 Data Repository: 210 data files at the current location

Data sources/credits

o Annot.exon_build10.txt
o Annot.exon.build10.gff
  -- Contributed by Martien Groenen et al [Martien.groenenwur.nl]

o Build.10_chr.ref_Groenen-lab.fa
  -- Contributed by Martien Groenen et al [Martien.groenenwur.nl]

o Genome_9.2   - NCBI 2009 assembly/annotation
o Genome_10.2f - Sanger 2011 preliminary assembly (July 2011)
o Genome_10.2_mappings  - Custom mapping data on build 10.2
o Genome_10.2_annotations - NCBI 2013 assembly/annotation
                                  (based on build 10.2)

o Multiple_Oligo_Comparison_Data
  -- Data from Chris Tuggle's oligo sequences comparison analysis.

o Pig60K_SNP_pos_build10.2.txt.gz
o Pig60K_SNP_pos_build10.txt.gz
o Pig60K_SNP_pos_build9.txt.gz
o Pig60K_SNP_ss_rsNumbers.zip
  -- Contributed by Martien Groenen et al [Martien.groenenwur.nl]

o Pig70K_SNP_annotations.csv.gz
  -- From Jeremy Walker [JWalkerneogen.com]
  -- See "Pig70K_SNP_annotations.README" for details

o PorcineSNP60_Ensembl_76_vep.txt.gz
  -- Ensembl VEP annotated pig 60K SNP chip data
    (Ensembl Release 76)

o SGSC_consortium_2008-2012
  -- SGSC Consortium members shared data.

Web Access Statistics © 2003-2017 NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team
Helpdesk