Horse Genome Analysis Data Repository
Data Repository
Name Size Time Last Modified
6_horse-breeds_variants 12 files2018-10-25 07:41:34
EquCab3_HISAT2Index 9 files2018-04-26 14:56:39
EquineSNP50_Ensembl_76_vep.txt.gz 1.36 MB2015-02-05 20:37:43
EquineSNP54kChips_translated.to.rs.txt.gz 574.21 KB2011-07-05 12:54:32
EquineSNP74kChips_translated.to.rs.txt.gz 805.34 KB2011-07-05 12:54:32
Genome_annotations 136 files2017-07-28 12:01:56
IARPlosGen.map.gz 451.82 KB2012-11-05 13:52:46
IARPlosGen.ped.gz 1.35 MB2012-11-05 13:51:58
QH_genotypes.txt.gz 59.14 MB2015-06-19 15:37:00
lamellar_transcripts.fa.gz 15.2 MB2015-01-26 10:31:04
laminae.assembly.full.bed.gz 2.52 MB2014-04-11 11:29:50
laminae.assembly.larger.bed.gz 1.71 MB2014-04-11 11:30:43
The NAGRP Data Repository: 161 data files at this location
Data sources/credits:

o 6_horse-breeds_variants
  Genome variations detected in six horse breeds.
  Data are from Mohammed Al Abri (maa288cornell.edu)
  and Samantha Brooks (samantha.brooksufl.edu)

o EquineSNP50_Ensembl_76_vep.txt.gz
  -- Ensembl VEP annotated horse SNP50 chip data
  (Ensembl Release 76)

o EquineSNP54kChips_translated.to.rs.txt.gz
o EquineSNP54kChips_translated.to.rs.txt.gz
  Data from Molly E. McCue (mccu0173umn.edu), University of Minnesota

o Genome_annotations
  Genome assembly and annotations in .fa, .mfa, .gff, and .genbank formats.
  
o IARPlosGen.map.gz
  IARPlosGen.ped.gz
  Data for "Genome-Wide Association Study Implicates Testis-Sperm
  Specific FKBP6 as a Susceptibility Locus for Impaired Acrosome
  Reaction in Stallions" by Terje Raudsepp, Molly E. McCue, Pranab J.
  Das, et al. published on PLOS Genetics (PGENETICS-D-12-01716R1).

o QH_genotypes.txt.gz
  - Horse genotype data with Neogen Equine Community Array
  - Data for "The American Quarter Horse: Population structure and 
    relationship to the Thoroughbred." by Petersen JL, Mickelson JR,
    Cleary KD, McCue ME. Journal of Heredity. (2014) 105:148-162
  - Original file: Petersen_et_al_2014_doi_10.1093jheredest079_RawData.txt
  - Contact: jessica.petersenunl.edu

o lamellar_transcripts.fa.gz
  laminae.assembly.full.bed.gz
  laminae.assembly.larger.bed.gz
  Data for "Generation of a de novo transcriptome from equine lamellar
  tissue" by Holl et al., published on BMC Genomics, 16(1):739.
 
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