Table 9

Set IX Fluorescent Primer Information
(Made in January, 2000)

All markers are arranged by chromosomal locations.


Chromosomal Locations Marker Name1 Relative Location Fluorescent
Dye
2
PCR Annealing Temperature Multiplex Group3 Primer Set4
Chr.1 S0008 43.5 Fam 58 - Set IX
Chr.1 SW1123 52.9 Hex 57 - Set IX
Chr.1 SW1430 58.5 Tet 60 - Set IX
Chr.1 SW65 70.2 Fam 65 - Set IX
Chr.1 SW1970 83.2 Hex 58 - Set IX
Chr.1 SWR1063 106.5 Tet 60 - Set IX
Chr.1 SW2512 144.0 Fam 50 - Set IX

Chr.2 SW1650 27.3 Hex 60 - Set IX
Chr.2 SW1686 46.0 Tet 58 - Set IX
Chr.2 SW2167 57.2 Fam 65 - Set IX
Chr.2 S0170 59.5 Fam 65 - Set IX
Chr.2 SW1517 76.9 Hex 58 - Set IX
Chr.2 SW1408 88.5 Hex 60 - Set IX
Chr.2 SWR345 114.4 Tet 55 - Set IX

Chr.3 SWR978 52.9 Tet 62 - Set IX
Chr.3 SW1315 55.7 Fam 58 - Set IX
Chr.3 ACTG2 62.6 Fam 58 - Set IX
Chr.3 SW828 64.8 Hex 58 - Set IX
Chr.3 SW2141 70.1 Tet 58 - Set IX

Chr.4 SW480 4.9 Tet 60 - Set IX
Chr.4 SW2409 40.5 Hex 58 - Set IX
Chr.4 SW2454 51.2 Tet 58 - Set IX
Chr.4 S0023 68.0 Fam 55 - Set IX
Chr.4 SW1996 77.0 Fam 60 - Set IX
Chr.4 S0161 121.0 Hex 65 - Set IX

Chr.5 SW332 73.6 Hex 58 - Set IX
Chr.5 SW1071 82.9 Tet 62 - Set IX
Chr.5 SW191 87.4 Fam 58 - Set IX
Chr.5 S0018 108.0 Tet 55 - Set IX
Chr.5 SW986 115.4 Hex 58 - Set IX

Chr.6 SW2535 9.5 Fam 58 - Set IX
Chr.6 S0297 49.1 Fam 60 - Set IX
Chr.6 SWR1130 65.0 Hex 64 - Set IX
Chr.6 SW492 68.7 Hex 60 - Set IX
Chr.6 SW1129 80.2 Tet 58 - Set IX
Chr.6 SW71 98.6 Tet 62 - Set IX
Chr.6 SW1647 108.7 Fam 60 - Set IX
Chr.6 SW1680 153.9 Hex 65 - Set IX
Chr.6 SW1202 159.1 Fam 58 - Set IX
Chr.6 SW2415 164.6 Tet 50 - Set IX

Chr.7 SW2001 5.2 Tet 58 - Set IX
Chr.7 SW1873 10.9 Hex 58 - Set IX
Chr.7 SW1409 57.1 Tet 55 - Set IX
Chr.7 SW1701 73.4 Fam 58 - Set IX
Chr.7 SWR2036 78.2 Hex 60 - Set IX
Chr.7 SW255 85.6 Fam 58 - Set IX
Chr.7 SW2428 90.1 Fam 58 - Set IX
Chr.7 SW1816 151.3 Tet 60 - Set IX

Chr.8 SW2521 23.1 Hex 65 - Set IX
Chr.8 SW268 27.0 Fam 60 - Set IX
Chr.8 SW1037 44.5 Tet 50 - Set IX
Chr.8 SW1953 58.2 Fam 58 - Set IX
Chr.8 SW2160 80.1 Hex 58 - Set IX
Chr.8 S0144 96.3 Tet 58 - Set IX
Chr.8 SW790 107.5 Hex 62 - Set IX
Chr.8 SW1980 126.1 Tet 62 - Set IX

Chr.9 SW511 70.4 Fam 60 - Set IX
Chr.9 SW1491 76.5 Tet 62 - Set IX
Chr.9 SW2495 77.0 Hex 50 - Set IX

Chr.10 SW767 20.4 Fam 60 - Set IX
Chr.10 SWR1849 65.1 Hex 60 - Set IX
Chr.10 SW2043 87.7 Tet 50 - Set IX

Chr.11 SWR2071 11.5 Tet 62 - Set IX
Chr.11 SW486 54.1 Hex 50 - Set IX
Chr.11 SW903 77.4 Fam 58 - Set IX

Chr.12 SW943 62.8 Fam 62 - Set IX
Chr.12 SW1553 67.4 Tet 58 - Set IX
Chr.12 SW1956 82.0 Fam 60 - Set IX
Chr.12 SW1936 99.6 Fam 58 - Set IX

Chr.13 S0076 27.9 Tet 58 - Set IX
Chr.13 S0282 35.0 Hex 60 - Set IX
Chr.13 SW452 36.9 Hex 60 - Set IX
Chr.13 SW520 74.4 Hex 62 - Set IX

Chr.14 SW2038 19.3 Tet 60 - Set IX
Chr.14 SW510 29.0 Fam 60 - Set IX
Chr.14 SW2519 51.0 Hex 60 - Set IX
Chr.14 SWR925 56.9 Tet 62 - Set IX
Chr.14 SW2488 67.0 Fam 58 - Set IX
Chr.14 SW1081 72.1 Hex 65 - Set IX

Chr.15 SW1118 38.0 Tet 62 - Set IX
Chr.15 S0118 60.0 Fam 55 - Set IX
Chr.15 SW1263 67.5 Hex 55 - Set IX
Chr.15 SW1945 76.0 Tet 58 - Set IX
Chr.15 SW2083 81.1 Fam 58 - Set IX
Chr.15 SW1339 122.0 Hex 60 - Set IX

Chr.16 SW1035 15.1 Tet 58 - Set IX
Chr.16 SW419 24.3 Fam 55 - Set IX
Chr.16 SW1305 36.5 Fam 58 - Set IX
Chr.16 SW1661 29.0 Hex 62 - Set IX
Chr.16 SW1809 37.3 Tet 58 - Set IX

Chr.X SW1903 57.8 Hex 60 - Set IX

To request fluorescent primer Set IX, please either:

  1. Use the online form to fill out your request (recommend),

    or

  2. Contact the U.S. Pig Genome Coordinator Max Rothschild at the address given below, and be sure to provide the following: (1) which primer set you request; (2) your complete postal address (NOT a P.O.Box); (3) your day-time phone number and (4) a signed copy of the Disclaimer and Terms of Use of Primers.
                Max F. Rothschild
                2255 Kildee Hall
                Department of Animal Science
                Iowa State University
                Ames, Iowa 50011
                Phone: 515-294-6202
                Fax:   515-294-2401
                Email:mfrothsc@iastate.edu
    

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