From Brian.Dalrymple csiro.au Thu Dec 13 19:38:00 2012
From: Brian.Dalrymplecsiro.au (by way of Jill Maddox <jillian.maddoxalumni.unimelb.edu.au>)
To: Multiple Recipients of <sheepmodelsanimalgenome.org>
Subject: Update on submission of RNA sequencing data to the sheep
genome annotation project
Date: Thu, 13 Dec 2012 19:38:00 -0600
Dear All,
The closing date for submissions of sheep RNA sequence data for the sheep
genome annotation project at ENSEMBL has been set as 31st Jan 2013.
Note: this only applies to data not already deposited in a public archive.
Public data will be obtained direct from the archive.
Data can be submitted in two ways, either on discs/drives to
Dr Steve Searle
Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SA
UK
If submitting on discs/drives I would appreciate receiving a short note
with the submission information (see below) so that the ISGC has a full
picture of how much data is being submitted, please send to
brian.dalrymplecsiro.au.
Or via the internet to the ISGC in Brisbane, we will then package the data
up to send to ENSEMBL. To submit via the internet you will need to contact
sean mcwilliam (sean.mcwilliamcsiro.au) on or after 7th January 2013. Sean
will provide you with the details of the upload procedure.
For both submission methods we need the following information about each
dataset
Submitter
Breed
Tissue
Sequencing platform
Read length
Single end or paired end
Stranded or not
Amplified or not
Approximate size of the dataset
fastq files of the reads are preferred, or alternatively BAM files of the
complete sets of reads (including nonaligned reads)
ENSEMBL is keen to release the aligned data as BAM files as well as the
gene models themselves. If this is a concern to you please indicate this in
the information file.
The data will only be used by ENSEMBL and only for the purposes of
construction of gene models and the annotation of the sheep reference
genome assembly.
I will send out a reminder email early in January. Any questions please
contact me, brian.dalrymplecsiro.au.
Thanks
Brian
Dr Brian Dalrymple
Senior Principal Research Scientist
Stream Leader - Nutrition and Nutrigenomics
CSIRO Animal, Food and Health Sciences
306 Carmody Road
St Lucia
QLD 4067
Australia
Phone +61 7 3214 2503
Fax +61 7 3214 2900
Mobile 0408 697 130
the sheep reference genome assembly Oar v3.1 -
http://www.livestockgenomics.csiro.au/sheep/oar3.1.php
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