Archived Post

From listmasteranimalgenome.org  Tue Jun 30 11:17:27 2020
Return-Path: <listmasteranimalgenome.org>
From: Paolo Zambonelli <paolo.zambonelliunibo.it>
Postmaster: submission approved by list moderator
To: Members of AnGenMap <angenmapanimalgenome.org>
Subject: R: Sus scrofa genome - Illumina SNP chip
Date: Tue, 30 Jun 2020 11:17:27 -0500

Hello,

I recently asked Illumina to re-map all the SNPs of the 70k SNP chip to
version 11.1 of the porcine genome. They provided me an updated manifest
file. I don't know if I can share this file but I ask to Illumina technical
support, that is reading this message on cc, if it is possible. Otherwise
anyone that is interested can contact directly Illumina.

Best regards,

Paolo Zambonelli

Dr. Paolo Zambonelli, PhD
Researcher
DISTAL
Alma Mater Studiorum - Universit=E0 di Bologna
Viale G. Fanin, 46 - I-40127 Bologna - Italy
tel +39 051 20 88055
mobile +39 340 144 84 06
paolo.zambonelliunibo.it
skype paolo.zzz
https://www.unibo.it/...eb/paolo.zambonelli/
https://www.unibo.it/.../paolo.zambonelli/en


-----Messaggio originale-----
Da: Jrn Bennewitz [mailto:j.bennewitzuni-hohenheim.de]
Inviato: marted 30 giugno 2020 16.29
A: Members of AnGenMap
Oggetto: Sus scrofa genome - Illumina SNP chip

Recently we ordered Illuminas new GGP Porcine HD Array (70k). Unfortunately
SNP positions in the manifest file are based on Sus scrofa genome version
10.2. Did anybody build a new map based on version 11.1 and would like to
share this information with us?


Sincerely, Jrn Bennewitz (University of Hohenheim, Germany)