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From listmasteranimalgenome.org  Mon Nov 11 08:41:28 2019
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From: Amabel Tenghe <amabel.tenghegmail.com>
Subject: Re: Pseudoautosomal boundary (PAB) in Pig reference
       genome
Postmaster: submission approved by list moderator
To: Members of AnGenMap <angenmapanimalgenome.org>
Date: Mon, 11 Nov 2019 08:41:28 -0600

Dear all,

Thank you for the tips. 

For anyone interested, we were able to lift the PAB from Das et al 2013 to the
new assembly.


Best regards,
Amabel

--
Amabel Tenghe, Ph.D.
Lehrstuhl für Tierzucht
Technische Universität München
Liesel-Beckmann-Str. 1
85354 Freising-Weihenstephan
Germany


Tel: +49 8161 713399
Email: mailto:amabel.tenghetum.de
http://www.tierzucht.tum.de



On Wed, Nov 6, 2019 at 5:56 PM Amabel Tenghe <mailto:amabel.tenghegmail.com> wrote:

Dear all,

In cattle, the pseudoautosomal boundary (PAB)  of the X chromosome has
been mapped to position ChrX: 133,300,518 (Johnson et al., 2019)⁠. This
information is important in treating the X chromosome appropriately in
genetic analysis that involve imputation and GWAS.

Does anyone know  the position of PAB on the Pig reference genome or an
article that I can be  referred to?

Best regards,

Amabel


Reference
Johnson, T. et al. (2019) ‘Short communication: Identification of the
pseudoautosomal region in the Hereford bovine reference genome assembly
ARS-UCD1.2’, Journal of Dairy Science. American Dairy Science
Association, 102(4), pp. 3254–3258. doi: 10.3168/jds.2018-15638.