- Analysis
- AGR SOP WGBS AgR data analysis
Last updated: 2020-06-10 (PDF)
- FBNGenomePhysiology SOP RNAseqDataProcessing
Last updated: 2019-09-18 (PDF)
- ROSLIN SOP CAGE analysis pipeline
Last updated: 2019-10-29 (PDF)
- ROSLIN SOP RNA-Seq analysis pipeline
Last updated: 2020-06-10 (PDF)
- UCD SOP processing and analyzing equine ChIP data
Last updated: 2019-10-30 (PDF)
- ULE SOP RNA-Seq Analysis
Last updated: 2017-05-04 (TXT)
- Roslin SOP Alignment-based RNA-Seq-Processing
Last updated: 2017-09-17 (PDF)
- WSU SOP ChIP-seq Bioinformatic Analysis Protocol 2020.pdf
- Assays
- AGR SOP WGBS AgR Libary prep
Last updated: 2020-06-10 (PDF)
- DEDJTR SOP SamplingMilkForRNA
Last updated: 2016-03-01 (PDF)
- EHU SOP sheep encephalon RNA extraction
Last updated: 2019-04-23 (PDF)
- INRA SOP ATAC-seq AG v1
Last updated: 2016-08-05 (PDF)
- INRA SOP Hi-C HA v1
Last updated: 2016-06-10 (PDF)
- INRA SOP RNA extraction
Last updated: 2016-05-04 (PDF)
- INRA SOP mRNA-seq long protocol
Last updated: 2016-09-08 (PDF)
- ISU SOP ChIP swine immune cells
Last updated: 2019-01-24 (PDF)
- ISU SOP Fetalliver
Last updated: 2018-09-15 (PDF)
- ISU SOP Macrophage isolation stimulation
Last updated: 2019-02-12 (PDF)
- ROSLIN SOP CAGE-library-preparation
Last updated: 2019-09-03 (PDF)
- ROSLIN SOP Chromatin Immunoprecipitation of Histone Marks
Last updated: 2016-11-17 (PDF)
- ROSLIN SOP DNA Purification Nasal Swabs
Last updated: 2014-07-29 (PDF)
- ROSLIN SOP Isolation of Total RNA from Cells With DNAse Treatment
Last updated: 2016-11-16 (PDF)
- ROSLIN SOP Isolation of Total RNA from Cells Without DNAse Treatment
Last updated: 2016-11-16 (PDF)
- ROSLIN SOP Tissue Fixation and Sonication of Chromatin for ChIP
Last updated: 2016-11-15 (PDF)
- UCD SOP ATAC-Seq Animal tissue
Last updated: 2020-02-12 (PDF)
- UCD SOP ChIP-Seq Animal tissue
Last updated: 2016-11-01 (PDF)
- UCD SOP ChIP-seq for Histone Marks
Last updated: 2019-11-01 (PDF)
- UCD SOP ChIP-seq for Histone Marks AdiposeTissue
Last updated: 2019-11-02 (PDF)
- UCD SOP RNA-Seq Library Prep
Last updated: 2015-05-10 (PDF)
- UCD SOP RNAIsolationNon-fiberousTissues
Last updated: 2018-04-04 (PDF)
- UCD SOP RNAIsolationTendon
Last updated: 2018-04-05 (PDF)
- UIUC SOP Complete Bisulfite Conversion and cleanup of DNA for Methylation Analysis
Last updated: 2017-05-23 (PDF)
- UIUC SOP PCR Product Isolation Protocol
Last updated: 2017-05-23 (PDF)
- UIUC SOP Simultaneous Purification of Genomic DNA and Total RNA
Last updated: 2017-05-23 (PDF)
- UIUC SOP Targeted Control Library Production Protocol
Last updated: 2017-06-09 (PDF)
- ULE SOP RNA-Seq Library Preperation
Last updated: 2017-06-05 (PDF)
- USDA SOP DNA Extraction From WholeBloodandLiver
Last updated: 2020-06-11 (PDF)
- USDA SOP RNA Extraction From Tissue
Last updated: 2018-06-26 (PDF)
- FBNGenomePhysiology SOP total RNALibraryPreparation
Last updated: 2019-09-18 (PDF)
- INRAE SOP Hi-C pig muscle tissue
Last updated: 2020-08-12 (PDF)
- INRA SOP GENESWITCH WP1 PIG EXTRACTION DNA RNA
Last updated: 2020-11-11 (PDF)
- ROSLIN SOP GENESWITCH WP1 CHICK EXTRACTION DNA RNA
Last updated: 2020-11-11 (PDF)
- WSU SOP Native ChIP-seq Protocol 2019.pdf
- Samples
- AGS SOP Sample collection RNAseq
Last updated: 2019-05-08 (PDF)
- DEDJTR SOP CryofreezingTissue
Last updated: 2016-03-17 (PDF)
- EHU SOP sheep encephalon Tissue collection
Last updated: 2019-04-22 (PDF)
- FBNGenomePhysiology SOP CryofreezingTissueSsamples
Last updated: 2016-03-31 (PDF)
- FBNGenomePhysiology SOP RNAPreparation
Last updated: 2019-09-05 (PDF)
- INRA SOP GENESWITCH D30 FETUS POOLING
Last updated: 2020-02-21 (PDF)
- INRA SOP GENESWITCH D30 FETUS SAMPLING
Last updated: 2020-02-21 (PDF)
- INRA SOP GENESWITCH D70 FETUS SAMPLING
Last updated: 2020-02-21 (PDF)
- INRA SOP GENESWITCH PIGLET SAMPLING
Last updated: 2020-02-21 (PDF)
- INRA SOP PBMC purification cattle caprine
Last updated: 2016-05-04 (PDF)
- INRA SOP PBMC seperation swine blood
Last updated: 2016-05-04 (PDF)
- INRA SOP alveolar macrophages mammals sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP chicken splenocytes sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP liver spleen mammarygland forHiC sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP oocytes granulosa mammals sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP sorting caprine CD cells
Last updated: 2017-12-01 (PDF)
- INRA SOP sorting cattle CD cells
Last updated: 2017-12-01 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-13 (PDF)
- INRA SOP sorting swine CD cells
Last updated: 2016-05-04 (PDF)
- INRA SOP testis forHiC sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP tissue aliquots sampling 1b
Last updated: 2016-07-21 (PDF)
- INRA SOP tissue sampling 1a
Last updated: 2016-07-21 (PDF)
- INRA SOP tracheal epithelium mammals sampling
Last updated: 2016-07-21 (PDF)
- KU Pool creation protocol
Last updated: 2017-05-23 (PDF)
- KU SOP Preperation of Genomic DNA from Small Samples
Last updated: 2017-05-16 (PDF)
- NMBU SOP Isolation of Monocyte-derived Macrophages from Blood of Norwegian Red Cattle
Last updated: 2017-12-19 (PDF)
- ROSLIN SOP Blood Leukocyte Isolation
Last updated: 2016-05-03 (PDF)
- ROSLIN SOP Collection of Blood or Nasal Swabs or Ear Tissue for Animal Genotyping
Last updated: 2016-10-19 (PDF)
- ROSLIN SOP Collection of tissue samples for ATAC-Seq and RNA-Seq from large animals
Last updated: 1806-20-20 (PDF)
- ROSLIN SOP Cryopreservation of Nuclei for ATACSeq using GentleMACS
Last updated: 1806-20-20 (PDF)
- ROSLIN SOP Culturing macrophages from bone marrow PBMCs and bronchoalveolar lavage
Last updated: 2016-07-15 (PDF)
- ROSLIN SOP Dissection of Brain Tissue from Large Animals
Last updated: 2016-04-13 (PDF)
- ROSLIN SOP Dissection of Cardiovascular Tissues from Large Animals
Last updated: 2016-04-13 (PDF)
- ROSLIN SOP Dissection of Embryonic and Female Reproductive Tissues from Large Animals
Last updated: 2016-04-17 (PDF)
- ROSLIN SOP Harvest of Large Animal Tissues
Last updated: 2016-05-16 (PDF)
- ROSLIN SOP Isolation of Macrophages from Lungs Blood and Bone Marrow of Large Animals
Last updated: 2016-05-16 (PDF)
- ROSLIN SOP Isolation of Ovine Embryonic Fibroblasts
Last updated: 2016-05-03 (PDF)
- ROSLIN SOP Isolation of RNA from RNAlater preserved tissue
Last updated: 2016-11-08 (PDF)
- ROSLIN SOP Isolation of RNA from frozen tissue
Last updated: 2016-11-08 (PDF)
- ROSLIN SOP Nasal Swabs Large Animals
Last updated: 2014-07-29 (PDF)
- TAMU SOP Cattle Mammary Gland Sample Collection Protocol
Last updated: 2018-02-22 (PDF)
- UCD SOP 50 TissueCollection
Last updated: 2016-05-20 (PDF)
- UCD SOP Equine whole animal collection
Last updated: 2018-01-05 (PDF)
- UIC SOP Tissue Collection Protocol
Last updated: 2017-04-12 (PDF)
- UIUC SOP Targeted Control Pool Creation Protocol
Last updated: 2017-05-17 (PDF)
- USU SOP Ovine Benz2616 Cell Isolation
Last updated: 2016-04-26 (PDF)
- USU SOP Ovine Benz2616 Tissue Collection
Last updated: 2016-04-26 (PDF)
- WUR SOP animal sampling
Last updated: 2016-04-05 (PDF)
- DIAGENODE SOP sorting chicken CD cells
Last updated: 2018-02-18 (PDF)
- DIAGENODE SOP sorting chicken CD cells
Last updated: 2018-02-19 (PDF)
- DIAGENODE SOP sorting chicken CD cells
Last updated: 2018-02-20 (PDF)
- DIAGENODE SOP sorting chicken CD cells
Last updated: 2018-02-22 (PDF)
- FBN SOP Milk Sampling & Milk Cell Isolation
Last updated: 2020-11-24 (PDF)
- FBN SOP pbMEC Isolation
Last updated: 2020-11-24 (PDF)
- INRAE SOP pig muscle tissue sampling
Last updated: 2020-08-12 (PDF)
- INRA SOP cartilage-sampling
Last updated: 2017-11-17 (PDF)
- INRA SOP FRAGENCODE mRNA-seq library preparation
Last updated: 2021-01-11 (PDF)
- INRA SOP alveolar-macrophages mammals sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP cattlebrain sampling
Last updated: 2017-11-04 (PDF)
- INRA SOP mammarygland sampling
Last updated: 2017-11-04 (PDF)
- INRA SOP oocytes-granulosa mammals sampling
Last updated: 2016-07-21 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-14 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-15 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-16 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-17 (PDF)
- INRA SOP sorting chicken CD cells
Last updated: 2018-02-18 (PDF)
- INRA SOP tissue sampling protocol 6
Last updated: 2018-04-26 (PDF)
- ISU SOP sorting swine immune cells
Last updated: 2021-01-13 (PDF)
- NMBU SOP Tissue sampling and freezing Ssal
Last updated: 2020-06-23 (PDF)
- QAAFI-UQ SOP CryofreezingTissue
Last updated: 2016-10-21 (PDF)
- QAAFI-UQ SOP sorting fake fake fake fake
Last updated: 2016-05-04 (PDF)
- ROSLIN SOP ATAC-Seq DNAIsolationandTagmentation Cryopreserved Muscle Nuclei Preparations
Last updated: 2020-07-20 (PDF)
- ROSLIN SOP ATAC-Seq LibraryPreparationandSizeSelection
Last updated: 2020-07-20 (PDF)
- ROSLIN SOP ATAC Seq DNAIsolationandTagmentation Frozen Muscle Tissue
Last updated: 2020-07-20 (PDF)
- ROSLIN SOP Collection of tissue samples for ATAC-Seq and RNA-Seq from large animals
Last updated: 2020-06-18 (PDF)
- ROSLIN SOP Cryopreservation of Nuclei for ATACSeq using GentleMACS
Last updated: 2020-11-19 (PDF)
- ROSLIN SOP GENESWITCH E15 EMBRYO SAMPLING
Last updated: 2020-09-15 (PDF)
- ROSLIN SOP GENESWITCH E8 EMBRYO POOLING
Last updated: 2020-09-15 (PDF)
- ROSLIN SOP GENESWITCH E8 EMBRYO SAMPLING
Last updated: 2020-09-15 (PDF)
- ROSLIN SOP GENESWITCH HATCHED CHICK SAMPLING
Last updated: 2020-09-15 (PDF)
- ROSLIN SOP GENESWITCH WP1 TeloPrime cDNA amplification
Last updated: 2020-11-16 (PDF)
- ROSLIN SOP RNA IsolationoftotalRNAfromfrozentissuesamples
Last updated: 2020-07-20 (PDF)
- UAL SOP CollectionAndTransportTissueCattleSampling
Last updated: 2021-01-18 (PDF)
- UAL SOP fakecollection
Last updated: 2021-01-18 (PDF)
- UIDAHO SOP Bovine FAANG fetal tissue collection
Last updated: 2018-11-28 (PDF)
- WSU SOP Pilot sheep tissue collection-Ovine FAANG Project
Last updated: 2020-08-13 (PDF)
- WU SOP GENESWITCH WP1 RRBS library preparation
Last updated: 2020-12-01 (PDF)
- ABDN SOP ATAC
Last updated: 2021-05-07 (PDF)
- ABDN SOP FAKEPROTOCOL
Last updated: 2021-05-10 (PDF)
- ABDN SOP Leukcoytes ext
Last updated: 2021-05-20 (PDF)
- ABDN SOP cell rna ext
Last updated: 2021-05-07 (PDF)
- ABDN SOP cell rna extraction
Last updated: 2021-05-07 (PDF)
- ABDN SOP tissue rna ext
Last updated: 2021-05-07 (PDF)
- INRAE SOP GENESWITCH POOLING CHICKEN ISO
Last updated: 2021-06-04 (PDF)
- INRAE SOP GENESWITCH POOLING ISO
Last updated: 2021-06-01 (PDF)
- ROSLIN SOP Specimen collection protocol
Last updated: 2021-06-07 (PDF)
- ROSLIN SOP uChIPmentation ChIPseq of histone marks using fish embryos
Last updated: 2021-05-26 (PDF)
- UNIPD SOP FAKE
Last updated: 2021-06-03 (PDF)
- UNIPD SOP Leucocytes Isolation and Stimulation Dlab
Last updated: 2020-05-18 (PDF)
- USC SOP embryo isolation ChIPseq
Last updated: 2021-06-02 (PDF)
- USC SOP embryonic cell isolation ATACseq
Last updated: 2021-06-02 (PDF)
- USC SOP turbot egg preservation RNAseq
Last updated: 2021-06-02 (PDF)
- Analyses
- ROSLIN SOP ATAC-Seq analysis pipeline
Last updated: 2020-11-13 (PDF)
- ROSLIN SOP RNA-Seq analysis pipeline
Last updated: 2020-11-13 (PDF)
- UCD SOP processing and analyzing equine PE ChIP data
Last updated: 2020-12-30 (PDF)
- Experiments
- DIAGENODE SOP GENESWITCH ATAC-SEQ
Last updated: 2020-11-18 (PDF)
- FBN SOP 10xGenomics CG000204 ChromiumNextGEMSingleCell3 v3.1 Rev B
Last updated: 2020-11-24 (PDF)
- FBN SOP 10xGenomics CG00053 SingleCellPrepGuide RevC
Last updated: 2020-11-24 (PDF)
- INRAE SOP FRAGENCODE DNA extraction
Last updated: 2021-04-16 (PDF)
- INRAE SOP FRAGENCODE WGS library preparation
Last updated: 2021-04-16 (PDF)
- INRAE SOP GENESWITCH CaptureHiC Cell Dissociation
Last updated: 2021-03-24 (PDF)
- INRAE SOP GENESWITCH WP1 PROMOTER CAPTURE HI-C
Last updated: 2021-03-25 (PDF)
- INRA SOP FRAGENCODE RNA extraction
Last updated: 2021-01-11 (PDF)
- ROSLIN SOP ATAC-Seq Cryopreservednucleisamplesfrompigmuscletissue Experimental Protocol
Last updated: 2020-07-20 (PDF)
- ROSLIN SOP ATAC-Seq Frozenpigmuscletissuesamples Experimental Protocol
Last updated: 2020-07-20 (PDF)
- ROSLIN SOP GENESWITCH WP1 PIG CHICK mRNAseq library preparation
Last updated: 2020-11-23 (PDF)
- ROSLIN SOP GENESWITCH WP1 mRNAseq library preparation
Last updated: 2020-11-23 (PDF)
- ROSLIN SOP GENESWITCH WP1 smallRNA-seq library preparation
Last updated: 2020-11-23 (PDF)
- ROSLIN SOP RNA RNAIsolationandSequencingofPigMuscleTissues Experimental Protocol
Last updated: 2020-07-20 (PDF)
- UCD SOP ChIP-seq for Histone Marks Bone
Last updated: 2020-12-18 (PDF)
- UCD SOP ChIP-seq for Histone Marks Skin
Last updated: 2020-12-18 (PDF)
- WU SOP GENESWITCH WP1 RRBS library preparation
Last updated: 2020-12-01 (PDF)
- WU SOP GENESWITCH WP1 WGBS library preparation
Last updated: 2021-01-27 (PDF)
- ABDN SOP ChIP
Last updated: 2021-05-19 (PDF)
- ABDN SOP ChIP
Last updated: 2021-05-20 (PDF)
- ABDN SOP cell rna ext
Last updated: 2021-05-07 (PDF)
- ABDN SOP cell rna ext
Last updated: 2021-05-17 (PDF)
- ABDN SOP fresh ATAC
Last updated: 2021-05-07 (PDF)
- ABDN SOP fresh ATAC
Last updated: 2021-05-17 (PDF)
- ABDN SOP fresh ATAC
Last updated: 2021-05-18 (PDF)
- ABDN SOP tissue rna ext
Last updated: 2021-05-07 (PDF)
- ABDN SOP tissue rna ext
Last updated: 2021-05-17 (PDF)
- INRA SOP invivo.invitro.challenges
Last updated: 2020-01-31 (PDF)
- NMBU SOP ChIP protocol
Last updated: 2021-05-04 (PDF)
- NMBU SOP Microchipmentation for histones Diagenode
Last updated: 2021-05-18 (PDF)
- NMBU SOP Microplex library preparation v3 Diagenode
Last updated: 2021-05-18 (PDF)
- NMBU SOP OmniATAC protocol
Last updated: 2020-04-29 (PDF)
- NMBU SOP POOL INPUT
Last updated: 2021-05-14 (PDF)
- NMBU SOP RNAextraction protocol
Last updated: 2020-05-03 (PDF)
- ROSLIN SOP ATACseq protocol part1
Last updated: 2021-05-27 (PDF)
- ROSLIN SOP ATACseq protocol part2
Last updated: 2021-05-27 (PDF)
- ROSLIN SOP GENESWITCH WP1 TeloPrime cDNA amplification
Last updated: 2021-02-25 (PDF)
- ROSLIN SOP RNAseq protocol
Last updated: 2021-05-27 (PDF)
- UNIPD SOP NucleoSpin-miRNA extraction
Last updated: 2021-06-03 (PDF)
- USC SOP RNAextraction protocol DevMap
Last updated: 2021-06-02 (PDF)
- USC SOP RNAextraction protocol ImmunoMap
Last updated: 2021-06-02 (PDF)
- USC SOP nuclei isolation tissue ATACseq
Last updated: 2021-06-02 (PDF)