A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
IRF7 location ⇒ 2:294209-294410   FP015900,CH242-40P17,2:291676-352927
(Clone quality: bE40P17 on chr=2; Num_of_Contigs=6; )
IRF8 location ⇒ 11:18115342-18115439   CU633573,CH242-275C14,11:18094257-18194483
(Clone quality: bE275C14 on chr=11; Num_of_Contigs=2; )
IRF8 location ⇒ 11:2612305-2612217   CU302238,CH242-151M19,11:2597459-2622919
(Clone quality: bE151M19 on chr=11; Num_of_Contigs=7; )
IRF8 location ⇒ 11:46293830-46293891   CU019582,CH242-327E8,11:46247445-46374607
(Clone quality: bE327E8 on chr=11; Num_of_Contigs=1; )
IRF8 location ⇒ 11:9808341-9808454   CU463100,CH242-94P16,11:9805639-9817749
(Clone quality: bE94P16 on chr=11; Num_of_Contigs=5; )
IRF9 ENSSSCG00000002002 7:81474517-81480486   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
IRG1   ENSSSCG00000009469 11:48023540-48212816    
IRG6 location ⇒ 3:118838497-118838862   CU928676,CH242-522B2,3:118833777-118839141
(Clone quality: bE522B2 on chr=3; Num_of_Contigs=14; )
IRG6 location ⇒ 3:118842255-118842421   CU928676,CH242-522B2,3:118839242-118848489
(Clone quality: bE522B2 on chr=3; Num_of_Contigs=14; )
IRG6 location ⇒ 3:118844509-118844741   CU928676,CH242-522B2,3:118839242-118848489
(Clone quality: bE522B2 on chr=3; Num_of_Contigs=14; )
IRG6 location ⇒ 3:118853469-118854340   CU928676,CH242-522B2,3:118848590-118854363
(Clone quality: bE522B2 on chr=3; Num_of_Contigs=14; )
IRGC   ENSSSCG00000003066 6:35144416-35145807   FP102993,CH242-270O18,6:35142805-35158894
(Clone quality: bE270O18 on chr=6; Num_of_Contigs=6; )
IRGQ   ENSSSCG00000003057 6:34938435-34939754   FP102604,CH242-184P4,6:34931170-34967938
(No clone quality info on )
IRS1   ENSSSCG00000016242 15:120872701-120981690    
IRS4   ENSSSCG00000012577 X:88228629-88230746   FP016024,CH242-477D6,X:88228628-88339199
(Clone quality: bE477D6 on chr=X; Num_of_Contigs=2; )
IRX3   ENSSSCG00000002831 6:21409304-21412025   CU457431,CH242-61D20,6:21404765-21569903
(Clone quality: bE61D20 on chr=6; Num_of_Contigs=1; )
IRX4   ENSSSCG00000017112 16:76471786-76475683   CU640453,CH242-254N17,16:76470419-76487775
(Clone quality: bE254N17 on chr=16; Num_of_Contigs=6; )
IRX6   ENSSSCG00000002830 6:20962508-20966533   CU993806,CH242-396B5,6:20900081-21049414
(Clone quality: bE396B5 on chr=6; Num_of_Contigs=1; )
ISCA1   ENSSSCG00000010953 10:27915331-27930162   CU694299,CH242-250G4,10:27769603-27962750
(Clone quality: bE250G4 on chr=10; Num_of_Contigs=2; )
ISCA2   ENSSSCG00000002367 7:105973931-105975932   CU682356,CH242-154M12,7:105945884-106062639
(Clone quality: bE154M12 on chr=7; Num_of_Contigs=2; )
ISG15 ENSSSCG00000011209 13:8633044-8723679   CU633903,CH242-265H17,13:8624321-8769900
(Clone quality: bE265H17 on chr=13; Num_of_Contigs=2; )
ISG15 ENSSSCG00000011393 13:27091825-27100758   CU914539,CH242-222N14,13:27078304-27105846
(Clone quality: bE222N14 on chr=13; Num_of_Contigs=2; )
ISG15 ENSSSCG00000000774 5:66010787-66016098    
ISG20 location ⇒ 1:200209501-200209441   FP017226,CH242-131P7,1:200194019-200214370
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20 location ⇒ 1:200211419-200211317   FP017226,CH242-131P7,1:200194019-200214370
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20 location ⇒ 1:200292859-200292654   FP017226,CH242-131P7,1:200286939-200334734
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20 location ⇒ 1:200293365-200293203   FP017226,CH242-131P7,1:200286939-200334734
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20L1 ENSSSCG00000005102 1:200299368-200305255   FP017226,CH242-131P7,1:200286939-200334734
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20L1 location ⇒ 1:200300330-200299909   FP017226,CH242-131P7,1:200286939-200334734
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20L1 location ⇒ 1:200301090-200300919   FP017226,CH242-131P7,1:200286939-200334734
(Clone quality: bE131P7 on chr=1; Num_of_Contigs=4; )
ISG20L2 ENSSSCG00000006471 4:97059936-97064585   CU582900,CH242-5K23,4:96992487-97070807
(Clone quality: bE5K23 on chr=4; Num_of_Contigs=3; )
ISG20L2 location ⇒ 4:97060443-97060652   CU582900,CH242-5K23,4:96992487-97070807
(Clone quality: bE5K23 on chr=4; Num_of_Contigs=3; )
ISG20L2 location ⇒ 4:97063311-97063515   CU582900,CH242-5K23,4:96992487-97070807
(Clone quality: bE5K23 on chr=4; Num_of_Contigs=3; )
ISG20L2 location ⇒ 4:97064190-97064456   CU582900,CH242-5K23,4:96992487-97070807
(Clone quality: bE5K23 on chr=4; Num_of_Contigs=3; )
ISGF3G location ⇒ 7:81474908-81474632   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
ISGF3G location ⇒ 7:81476811-81476466   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
ISGF3G location ⇒ 7:81478861-81478676   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
ISGF3G location ⇒ 7:81479369-81479185   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
ISL1   ENSSSCG00000016883 16:28001106-28011168   CU915536,CH242-107K17,16:27993624-28037723
(Clone quality: bE107K17 on chr=16; Num_of_Contigs=15; )
ISLR ENSSSCG00000001910 7:64777003-64778289 CT797479,CH242-196N13,7:64639731-64852331
(Clone quality: bE196N13 on chr=7; Num_of_Contigs=2; ) 		 
ISLR location ⇒ 7:64778299-64776288 CT797479,CH242-196N13,7:64639731-64852331
(Clone quality: bE196N13 on chr=7; Num_of_Contigs=2; ) 		 
ISLR location ⇒ 7:64779464-64779125 CT797479,CH242-196N13,7:64639731-64852331
(Clone quality: bE196N13 on chr=7; Num_of_Contigs=2; ) 		 
ISLR2   ENSSSCG00000001911 7:64812854-64815094 CT797479,CH242-196N13,7:64639731-64852331
(Clone quality: bE196N13 on chr=7; Num_of_Contigs=2; ) 		 
ISM2   ENSSSCG00000002405 7:108747789-108748322   CU468695,CH242-190O3,7:108739544-108748893
(Clone quality: bE190O3 on chr=7; Num_of_Contigs=13; )
ISOC1 ENSSSCG00000014258 2:119619441-119640124    
ISOC1 location ⇒ 14:91026505-91026605   CU694211,CH242-11D22,14:91020358-91031417
(Clone quality: bE11D22 on chr=14; Num_of_Contigs=7; )
ISOC1 location ⇒ 14:91149522-91149622   CU633231,CH242-18F10,14:91143645-91154798
(Clone quality: bE18F10 on chr=14; Num_of_Contigs=5; )
ISOC2   ENSSSCG00000003289 6:41279330-41287034    
ISPD   ENSSSCG00000015358 9:80206542-80291476    
ISX   ENSSSCG00000000153 5:8589693-8605681    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-33

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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