Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 6201 - 6300:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig06201 ubiquitin specific peptidase 52 405 20 1.45E-53 80.95% 7 C:cytoplasm; F:poly(A)-specific ribonuclease activity; F:nucleic acid binding; P:ubiquitin-dependent protein catabolic process; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; F:ubiquitin thiolesterase activity; C:nucleus EC:3.1.13.4; EC:3.1.2.15  
contig06202 nucleolar protein 10 263 20 2.12E-36 90.70% 1 C:nucleus    
contig06203 unnamed protein product [Tetraodon nigroviridis] 254 2 9.03E-27 72.00% 0      
contig06204 gtpase activating protein (sh3 domain) binding protein 2 255 20 1.87E-40 94.45% 6 F:RNA binding; C:intracellular; F:nucleotide binding; F:protein binding; P:transport; P:small GTPase mediated signal transduction    
contig06205 ---NA--- 615 0     0      
contig06206 Unknown (protein for MGC:179785) [Xenopus laevis] 253 1 9.71E-05 53.00% 0      
contig06207 deah (asp-glu-ala-his) box polypeptide 37 251 20 8.45E-22 68.65% 1 F:binding    
contig06208 ---NA--- 270 0     0      
contig06209 high-mobility group protein 2-like 1 409 1 3.60E-12 62.00% 0      
contig06210 ---NA--- 423 0     0      
contig06211 ---NA--- 260 0     0      
contig06212 ---NA--- 256 0     0      
contig06213 smc4 protein 507 20 1.55E-32 95.05% 8 C:cytoplasm; P:DNA metabolic process; P:mitotic chromosome condensation; F:ATP binding; C:chromosome; C:nucleus; F:protein heterodimerization activity; P:cell division    
contig06214 ---NA--- 256 0     0      
contig06215 ubiquitin specific peptidase 11 257 20 2.80E-28 85.35% 5 P:ubiquitin-dependent protein catabolic process; F:ubiquitin thiolesterase activity; P:ubiquitin cycle; F:cysteine-type endopeptidase activity; C:nucleus EC:3.1.2.15; EC:3.4.22.0  
contig06216 nonhomologous end-joining factor 1 454 20 3.23E-37 66.40% 6 F:identical protein binding; P:double-strand break repair via nonhomologous end joining; P:T cell differentiation; P:response to ionizing radiation; C:nucleus; P:B cell differentiation    
contig06217 ---NA--- 269 0     0      
contig06218 ---NA--- 284 0     0      
contig06219 ---NA--- 380 0     0      
contig06220 subfamily member 7 298 1 9.55E-05 92.00% 2 F:heat shock protein binding; C:C    
contig06221 isoform cra_b 268 20 9.79E-34 92.00% 7 C:extracellular space; F:DNA binding; P:ATP-dependent proteolysis; F:ATP binding; F:nucleoside-triphosphatase activity; F:ATP-dependent peptidase activity; C:mitochondrion EC:3.6.1.15  
contig06222 ---NA--- 258 0     0      
contig06223 ---NA--- 247 0     0      
contig06224 cd63-like protein 243 2 2.17E-09 79.50% 0      
contig06225 nif3 ngg1 interacting factor 3-like 1 289 20 3.53E-23 69.25% 2 P:positive regulation of transcription, DNA-dependent; F:transcription factor binding    
contig06226 ---NA--- 264 0     0      
contig06227 ---NA--- 253 0     0      
contig06228 ---NA--- 237 0     0      
contig06229 ---NA--- 274 0     0      
contig06230 ---NA--- 281 0     0      
contig06231 ---NA--- 260 0     0      
contig06232 ---NA--- 291 0     0      
contig06233 ---NA--- 588 0     0      
contig06234 ---NA--- 487 0     0      
contig06235 trna-specific adenosine deaminase 3 571 19 2.44E-31 67.63% 1 F:metal ion binding    
contig06236 ---NA--- 246 0     0      
contig06237 ---NA--- 335 0     0      
contig06238 glutamyl-trna subunit c homolog 603 20 9.31E-59 76.45% 4 P:regulation of translational fidelity; F:F; P:P; C:C    
contig06239 nedd8 precursor 577 20 4.93E-19 93.85% 4 P:protein modification process; F:protein binding; P:ubiquitin-dependent protein catabolic process; P:regulation of proteolysis    
contig06240 rna polymerase ii associated protein 2 432 20 7.45E-26 71.45% 4 F:F; C:integral to membrane; C:membrane; P:P    
contig06241 mitochondrial intermediate peptidase 250 20 4.48E-23 73.85% 5 C:mitochondrion; F:manganese ion binding; F:magnesium ion binding; P:mitochondrial protein processing during import; F:mitochondrial intermediate peptidase activity EC:3.4.24.59  
contig06242 cell division cycle 26 252 18 4.07E-11 93.89% 6 P:mitosis; P:ubiquitin cycle; C:anaphase-promoting complex; F:peptidyl-prolyl cis-trans isomerase activity; P:regulation of mitotic cell cycle; P:cell division EC:5.2.1.8  
contig06243 pseudouridylate synthase 3 501 20 4.98E-63 71.00% 3 ; P:pseudouridine synthesis; F:tRNA binding    
contig06244 polyamine-modulated factor 1 344 20 1.70E-25 61.15% 2 F:protein binding; P:cellular process    
contig06245 source of immunodominant mhc-associated peptides 359 20 1.32E-14 89.10% 4 C:endoplasmic reticulum membrane; C:integral to membrane; F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity; P:protein amino acid N-linked glycosylation via asparagine EC:2.4.1.119  
contig06246 wdr33 protein 362 20 3.10E-39 90.45% 6 C:cytoplasm; P:spermatogenesis; P:phosphate transport; F:protein binding; C:nucleus; P:postreplication repair    
contig06247 toll interacting protein 422 20 2.97E-38 84.80% 11 C:cytoplasm; F:receptor activity; P:leukocyte activation; P:inflammatory response; C:interleukin-1 receptor complex; ; P:phosphorylation; C:interleukin-18 receptor complex; P:cell-cell signaling; P:immune response; F:Toll binding    
contig06248 solute carrier family member 46 236 20 5.39E-16 82.85% 4 F:binding; C:mitochondrial inner membrane; P:transport; C:membrane attack complex    
contig06249 ---NA--- 243 0     0      
contig06250 haloacid dehalogenase-like hydrolase domain containing 2 378 20 2.66E-54 88.25% 2 P:metabolic process; F:hydrolase activity    
contig06251 proteasome ( macropain) 26s atpase 3 257 20 1.34E-38 97.50% 8 C:protein complex; F:protein binding; P:protein catabolic process; F:ATP binding; F:nucleoside-triphosphatase activity; C:nucleus; C:cytosol; P:blastocyst development EC:3.6.1.15  
contig06252 ---NA--- 262 0     0      
contig06253 chromosome 12 open reading frame 5 255 20 9.33E-16 80.20% 1 F:catalytic activity    
contig06254 ---NA--- 260 0     0      
contig06255 ---NA--- 227 0     0      
contig06256 ---NA--- 427 0     0      
contig06257 fer-1-like myoferlin ( elegans) 246 20 2.32E-11 93.40% 0      
contig06258 ---NA--- 284 0     0      
contig06259 centromere protein p 417 16 8.42E-25 65.44% 1 C:chromosome    
contig06260 ---NA--- 485 0     0      
contig06261 filamin b 246 20 2.56E-10 87.40% 0      
contig06262 ---NA--- 480 0     0      
contig06263 cytochrome b5 reductase 4 306 20 7.42E-34 68.50% 7 C:cytoplasm; F:cytochrome-b5 reductase activity; P:heme biosynthetic process; P:cellular iron ion homeostasis; F:iron ion binding; F:heme binding; P:iron ion transport EC:1.6.2.2  
contig06264 ---NA--- 271 0     0      
contig06265 ---NA--- 262 0     0      
contig06266 tousled-like kinase 2 322 20 2.86E-41 96.70% 12 P:chromatin modification; F:protein serine/threonine kinase activity; P:cell cycle; P:spermatogenesis; F:ATP binding; F:protein binding; P:multicellular organismal development; ; P:regulation of chromatin assembly or disassembly; C:nucleus; P:protein amino acid phosphorylation; P:response to DNA damage stimulus EC:2.7.11.0  
contig06267 spindle assembly 6 homolog ( elegans) 427 20 1.08E-40 81.90% 6 P:spermatogenesis; P:mitotic spindle organization; P:centrosome duplication; P:nuclear division; P:embryonic cleavage; C:centrosome    
contig06268 akr7a2 protein 409 20 6.26E-57 76.90% 5 P:carbohydrate metabolic process; F:electron carrier activity; C:mitochondrion; P:cellular aldehyde metabolic process; F:aldehyde reductase activity EC:1.1.1.21  
contig06269 ---NA--- 260 0     0      
contig06270 ---NA--- 391 0     0      
contig06271 ---NA--- 257 0     0      
contig06272 ---NA--- 682 0     0      
contig06273 ---NA--- 292 0     0      
contig06274 slingshot homolog 1 245 20 2.65E-23 82.75% 10 C:cytoplasm; F:protein tyrosine phosphatase activity; C:cytoskeleton; P:actin cytoskeleton organization; F:protein tyrosine/serine/threonine phosphatase activity; P:cell morphogenesis; F:actin binding; C:plasma membrane; P:protein amino acid dephosphorylation; C:cell projection EC:3.1.3.48  
contig06275 parkinson disease (autosomal juvenile) parkin 314 20 7.34E-42 76.85% 26 C:membrane raft; P:protein ubiquitination during ubiquitin-dependent protein catabolic process; P:startle response; C:neuron projection; P:locomotory behavior; F:zinc ion binding; P:regulation of neurotransmitter secretion; P:central nervous system development; P:response to corticosterone stimulus; P:norepinephrine metabolic process; P:learning; P:dopamine metabolic process; P:neuron maturation; C:Golgi apparatus; P:synaptic transmission, glutamatergic; F:ubiquitin-protein ligase activity; P:dopamine uptake; P:response to drug; C:postsynaptic density; C:synaptic vesicle; P:regulation of synaptic transmission; P:zinc ion transport; C:perinuclear region of cytoplasm; F:protein complex binding; C:endoplasmic reticulum; P:response to unfolded protein EC:6.3.2.19  
contig06276 ---NA--- 241 0     0      
contig06277 ---NA--- 333 0     0      
contig06278 ankyrin repeat domain-containing protein 11 (ankyrin repeat-containing cofactor 1) 254 1 6.73E-06 90.00% 0      
contig06279 family with sequence similarity member b 376 20 1.62E-36 85.80% 1 F:binding    
contig06280 riken cdna 2700097o09 569 20 2.82E-48 71.10% 1 F:transferase activity    
contig06281 ---NA--- 246 0     0      
contig06282 e3 ubiquitin ligase smurf1 563 20 1.61E-40 93.20% 7 P:cell differentiation; P:negative regulation of BMP signaling pathway; C:intracellular; F:protein binding; P:ectoderm development; F:ubiquitin-protein ligase activity; P:protein ubiquitination during ubiquitin-dependent protein catabolic process EC:6.3.2.19  
contig06283 ---NA--- 294 0     0      
contig06284 f-box protein 11 287 20 4.74E-52 98.10% 11 P:ubiquitin-dependent protein catabolic process; F:zinc ion binding; F:peptidyl-arginine C-methyltransferase activity; F:ubiquitin-protein ligase activity; P:protein ubiquitination; F:protein binding; F:histone-arginine N-methyltransferase activity; C:ubiquitin ligase complex; P:sensory perception of sound; C:cytoplasm; C:nucleus EC:6.3.2.19; EC:2.1.1.125  
contig06285 ---NA--- 250 0     0      
contig06286 cnksr family member 3 255 20 6.87E-35 88.10% 4 C:membrane; C:cytoplasm; P:regulation of signal transduction; F:protein binding    
contig06287 ---NA--- 286 0     0      
contig06288 ---NA--- 256 0     0      
contig06289 ---NA--- 191 0     0      
contig06290 ---NA--- 301 0     0      
contig06291 ---NA--- 137 0     0      
contig06292 ---NA--- 265 0     0      
contig06293 ribosomal protein s6 kinase polypeptide 6 241 20 3.25E-21 85.55% 5 P:protein amino acid phosphorylation; C:ribosome; F:ATP binding; F:magnesium ion binding; F:protein serine/threonine kinase activity EC:2.7.11.0  
contig06294 keratin 13 327 20 3.73E-17 81.95% 2 C:intermediate filament; F:structural molecule activity    
contig06295 p53 tumor supressor protein 431 2 1.57E-07 83.00% 15 P:RNA-protein covalent cross-linking; F:transcription factor activity; F:DNA binding; C:nucleus; P:negative regulation of cell cycle; P:apoptosis; C:cytoplasm; F:zinc ion binding; P:negative regulation of cell growth; P:regulation of transcription, DNA-dependent; F:metal ion binding; P:transcription; P:cell cycle; P:response to tumor cell; P:regulation of transcription    
contig06296 ---NA--- 257 0     0      
contig06297 ---NA--- 465 0     0      
contig06298 glutamic-oxaloacetic transaminase mitochondrial (aspartate aminotransferase 2) 282 20 1.81E-39 93.90% 11 P:oxaloacetate metabolic process; P:glutamate catabolic process to 2-oxoglutarate; P:aspartate biosynthetic process; C:mitochondrial inner membrane; C:extracellular space; P:lipid transport; P:glutamate catabolic process to aspartate; C:mitochondrial matrix; F:pyridoxal phosphate binding; F:L-aspartate:2-oxoglutarate aminotransferase activity; C:plasma membrane EC:2.6.1.1  
contig06299 ribosomal rna processing 1 homolog b 643 20 3.76E-19 56.00% 3 F:protein binding; C:nucleus; C:cytosol    
contig06300 ss18-like protein 2 488 20 1.42E-32 90.05% 2 P:P; C:C    
100 Rows returned.
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