Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 5901 - 6000:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig05901 hect domain containing 3 463 20 7.73E-79 78.45% 4 C:intracellular; P:cell adhesion; P:ubiquitin cycle; F:ubiquitin-protein ligase activity EC:6.3.2.19  
contig05902 general transcription factor polypeptide 52kda 479 20 7.85E-68 88.70% 54 F:valine-tRNA ligase activity; C:MHC class I protein complex; P:protein amino acid glycosylation; P:protein amino acid phosphorylation; P:protein folding; F:zinc ion binding; C:actin filament; F:tumor necrosis factor receptor binding; F:steroid hormone receptor activity; P:cell adhesion; P:transcription from RNA polymerase II promoter; C:MHC class II protein complex; P:metal ion transport; C:phagocytic cup; C:PML body; ; P:regulation of small GTPase mediated signal transduction; F:ganglioside galactosyltransferase activity; P:immune response; P:cell morphogenesis; F:metal ion transmembrane transporter activity; P:phosphate transport; F:extracellular matrix structural constituent; C:extracellular space; F:protein N-terminus binding; P:androgen receptor signaling pathway; F:calcium ion binding; C:integral to membrane; P:negative regulation of transcription, DNA-dependent; C:Golgi apparatus; P:transmembrane receptor protein tyrosine kinase signaling pathway; F:RNA polymerase II transcription factor activity; C:holo TFIIH complex; C:ruffle; C:prefoldin complex; F:sequence-specific DNA binding; P:valyl-tRNA aminoacylation; P:apoptosis; F:steroid binding; C:heterochromatin; F:unfolded protein binding; F:transcription factor activity; P:cytokinesis after mitosis; F:transmembrane receptor protein tyrosine kinase activity; P:antigen processing and presentation of endogenous peptide antigen via MHC class I; C:collagen; F:protein homodimerization activity; F:transcription factor binding; F:ATP binding; P:actin filament bundle assembly; F:androgen receptor binding; F:transcription repressor activity; P:DNA repair; F:guanyl-nucleotide exchange factor activity EC:6.1.1.9; EC:2.4.1.62; EC:2.7.10.1  
contig05903 trafficking protein particle complex 2 241 20 9.75E-26 97.65% 6 C:Golgi apparatus; P:skeletal system development; F:transcription factor binding; P:ER to Golgi vesicle-mediated transport; C:endoplasmic reticulum; P:regulation of transcription, DNA-dependent    
contig05904 transducin-like enhancer of split 3 (e drosophila) isoform 1 320 20 3.09E-19 100.00% 5 P:spermatogenesis; P:cell differentiation; P:multicellular organismal development; C:nucleus; P:regulation of transcription, DNA-dependent    
contig05905 uridine-cytidine kinase 1-like 1 479 20 1.03E-35 92.65% 6 F:uridine kinase activity; P:metabolic process; F:ATP binding; C:cytoplasm; F:phosphotransferase activity, alcohol group as acceptor; C:nucleus EC:2.7.1.48; EC:2.7.1.0  
contig05906 ---NA--- 343 0     0      
contig05907 mcm3 minichromosome maintenance deficient 3 250 20 5.85E-23 93.60% 9 P:regulation of DNA replication initiation; P:cell cycle; P:regulation of transcription, DNA-dependent; C:MCM complex; F:DNA binding; F:ATP binding; F:DNA-dependent ATPase activity; P:retina development in camera-type eye; F:chromatin binding    
contig05908 ---NA--- 361 0     0      
contig05909 ---NA--- 428 0     0      
contig05910 chromatin modifying protein 4c 340 2 3.68E-09 83.00% 5 F:F; C:cytoplasm; P:transport; P:protein transport; C:C    
contig05911 f-box and wd-40 domain protein 11a 336 1 4.68E-04 88.00% 0      
contig05912 ---NA--- 252 0     0      
contig05913 ---NA--- 217 0     0      
contig05914 ---NA--- 274 0     0      
contig05915 ---NA--- 516 0     0      
contig05916 ---NA--- 263 0     0      
contig05917 ---NA--- 248 0     0      
contig05918 ---NA--- 278 0     0      
contig05919 proline-rich protein bca3 452 10 5.94E-23 53.70% 0      
contig05920 ---NA--- 273 0     0      
contig05921 ---NA--- 310 0     0      
contig05922 ---NA--- 261 0     0      
contig05923 wd repeat and hmg-box dna binding protein 1 631 20 5.44E-76 74.60% 3 C:cytoplasm; C:nucleoplasm; F:DNA binding    
contig05924 ---NA--- 263 0     0      
contig05925 ---NA--- 153 0     0      
contig05926 basigin 913 20 1.31E-108 68.20% 1 C:membrane    
contig05927 PREDICTED: wu:fb21f05 [Danio rerio] 367 2 3.55E-20 69.00% 0      
contig05928 ---NA--- 252 0     0      
contig05929 las1-like ( cerevisiae) 354 20 2.24E-46 75.45% 1 F:protein binding    
contig05930 nitrilase 1 244 20 6.08E-28 75.45% 1 F:nitrilase activity EC:3.5.5.1  
contig05931 ---NA--- 266 0     0      
contig05932 regulator of chromosome condensation 1 267 20 1.56E-31 86.55% 5 P:mitosis; C:cytoplasm; F:guanyl-nucleotide exchange factor activity; C:nucleus; P:cell division    
contig05933 ---NA--- 529 0     0      
contig05934 ---NA--- 221 0     0      
contig05935 ---NA--- 264 0     0      
contig05936 fibronectin type iii and spry domain containing 1 247 20 7.39E-34 77.25% 4 P:mitosis; C:cytoplasm; C:microtubule; C:nucleus    
contig05937 transposase yabusame-1 262 8 1.03E-06 58.13% 0      
contig05938 ---NA--- 267 0     0      
contig05939 glyoxalase 1 381 20 5.49E-61 89.65% 4 P:carbohydrate metabolic process; P:anti-apoptosis; F:zinc ion binding; F:lactoylglutathione lyase activity EC:4.4.1.5  
contig05940 phosphoribosylformylglycinamidine synthase 273 20 1.35E-43 90.50% 6 C:cytoplasm; P:glutamine metabolic process; P:'de novo' IMP biosynthetic process; F:protein binding; F:ATP binding; F:phosphoribosylformylglycinamidine synthase activity EC:6.3.5.3  
contig05941 ---NA--- 266 0     0      
contig05942 ---NA--- 251 0     0      
contig05943 ---NA--- 150 0     0      
contig05944 ---NA--- 422 0     0      
contig05945 ---NA--- 265 0     0      
contig05946 tu translation elongation mitochondrial 602 20 4.12E-59 80.65% 6 F:translation elongation factor activity; C:mitochondrial inner membrane; F:GTP binding; F:protein binding; P:translational elongation; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig05947 ---NA--- 259 0     0      
contig05948 ---NA--- 260 0     0      
contig05949 valyl-trna synthetase 503 20 6.51E-76 89.20% 53 F:valine-tRNA ligase activity; C:MHC class I protein complex; P:protein amino acid glycosylation; P:protein amino acid phosphorylation; P:protein folding; F:zinc ion binding; C:actin filament; F:tumor necrosis factor receptor binding; F:steroid hormone receptor activity; P:cell adhesion; C:MHC class II protein complex; P:metal ion transport; C:phagocytic cup; C:PML body; ; P:regulation of small GTPase mediated signal transduction; F:ganglioside galactosyltransferase activity; P:immune response; P:cell morphogenesis; F:metal ion transmembrane transporter activity; P:phosphate transport; F:extracellular matrix structural constituent; C:extracellular space; F:protein N-terminus binding; P:androgen receptor signaling pathway; F:calcium ion binding; C:integral to membrane; P:negative regulation of transcription, DNA-dependent; C:Golgi apparatus; P:transmembrane receptor protein tyrosine kinase signaling pathway; F:RNA polymerase II transcription factor activity; C:ruffle; C:prefoldin complex; F:sequence-specific DNA binding; P:valyl-tRNA aminoacylation; P:apoptosis; F:steroid binding; C:heterochromatin; F:unfolded protein binding; F:transcription factor activity; P:cytokinesis after mitosis; F:transmembrane receptor protein tyrosine kinase activity; P:antigen processing and presentation of endogenous peptide antigen via MHC class I; C:collagen; F:protein homodimerization activity; F:transcription factor binding; F:ATP binding; P:actin filament bundle assembly; F:androgen receptor binding; F:transcription repressor activity; C:mitochondrion; P:DNA repair; F:guanyl-nucleotide exchange factor activity EC:6.1.1.9; EC:2.4.1.62; EC:2.7.10.1  
contig05950 uncharacterized protein c1orf172 254 2 1.50E-05 60.00% 0      
contig05951 alveolar soft part sarcoma chromosome candidate 1 295 20 2.87E-25 84.30% 11 C:microsome; C:extrinsic to membrane; F:protein binding; C:vesicle membrane; P:glucose homeostasis; P:intracellular protein transport; C:internal side of plasma membrane; C:peripheral to membrane of membrane fraction; C:cytosol; P:regulation of glucose import; C:perinuclear region of cytoplasm    
contig05952 tetraspanin 14 300 19 8.32E-09 89.11% 1 C:membrane attack complex    
contig05953 ---NA--- 245 0     0      
contig05954 family with sequence similarity member b 239 20 1.73E-14 88.40% 1 F:protein binding    
contig05955 tnf receptor-associated factor 6 442 20 1.58E-31 78.75% 29 P:response to virus; P:regulation of immunoglobulin secretion; P:positive regulation of T cell cytokine production; F:protein binding; P:T-helper 1 type immune response; F:zinc ion binding; C:membrane fraction; P:odontogenesis of dentine-containing tooth; P:response to bacterium; P:positive regulation of interleukin-2 production; P:ossification; P:positive regulation of interleukin-12 biosynthetic process; F:transcription activator activity; C:cytosol; P:JNK cascade; P:antigen processing and presentation of exogenous peptide antigen via MHC class II; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; P:positive regulation of smooth muscle cell proliferation; F:ubiquitin-protein ligase activity; P:T cell receptor signaling pathway; P:neural tube closure; P:activation of NF-kappaB-inducing kinase activity; P:positive regulation of interleukin-6 biosynthetic process; P:positive regulation of transcription from RNA polymerase II promoter; F:receptor activity; P:ubiquitin cycle; P:regulation of apoptosis; P:myeloid dendritic cell differentiation; P:cytokine-mediated signaling pathway EC:6.3.2.19  
contig05956 ---NA--- 272 0     0      
contig05957 nuclear transcription x-box binding 1 263 2 2.44E-08 84.00% 0      
contig05958 amino-terminal enhancer of split 318 20 8.06E-44 96.55% 8 P:organ morphogenesis; P:regulation of transcription from RNA polymerase II promoter; P:Wnt receptor signaling pathway; F:transcription corepressor activity; P:skeletal system development; C:nucleus; P:negative regulation of transcription; P:regulation of growth    
contig05959 queuine trna-ribosyltransferase 1 276 20 8.46E-38 92.70% 5 F:queuine tRNA-ribosyltransferase activity; C:ribosome; P:zinc ion transport; P:queuosine biosynthetic process; F:zinc ion binding EC:2.4.2.29  
contig05960 fascin homolog actin-bundling protein (strongylocentrotus purpuratus) 241 20 1.40E-32 86.70% 6 F:protein binding, bridging; C:filopodium; P:actin filament bundle assembly; F:actin filament binding; C:actin cytoskeleton; P:cell proliferation    
contig05961 ---NA--- 431 0     0      
contig05962 ---NA--- 240 0     0      
contig05963 ---NA--- 399 0     0      
contig05964 ---NA--- 246 0     0      
contig05965 ---NA--- 252 0     0      
contig05966 ---NA--- 408 0     0      
contig05967 vacuolar protein sorting 36 297 20 2.49E-37 96.60% 8 F:lipid binding; C:late endosome; C:lysosome; P:endosome transport; F:ubiquitin binding; C:nucleus; P:regulation of transcription, DNA-dependent; P:protein transport    
contig05968 alpha- -mannosyltransferase alg12 543 20 2.79E-31 67.55% 4 P:protein amino acid N-linked glycosylation; F:alpha-1,6-mannosyltransferase activity; C:endoplasmic reticulum; C:membrane part    
contig05969 dimeric dihydrodiol dehydrogenase 246 20 2.92E-14 74.75% 5 F:trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity; P:metabolic process; F:binding; P:electron transport; F:D-xylose 1-dehydrogenase (NADP+) activity EC:1.3.1.20; EC:1.1.1.179  
contig05970 alanine aminotransferase 461 20 3.58E-37 69.55% 1 F:transferase activity, transferring nitrogenous groups    
contig05971 zinc finger protein 37 homolog 609 20 2.51E-75 55.70% 1 F:binding    
contig05972 wd repeat domain 61 701 20 1.98E-75 83.95% 2 F:F; P:P    
contig05973 ---NA--- 261 0     0      
contig05974 arginine serine-rich coiled-coil 2 241 20 1.28E-17 88.80% 2 F:F; C:C    
contig05975 zinc finger protein 330 284 20 4.03E-40 95.20% 5 C:nucleolus; C:chromosome, centromeric region; C:midbody; F:zinc ion binding; F:protein binding    
contig05976 biogenesis of lysosome-related organelles complex-1 subunit 3 567 20 3.11E-63 60.05% 2 P:developmental pigmentation; F:protein binding    
contig05977 ---NA--- 253 0     0      
contig05978 adenosine trna-specific 1 362 20 7.45E-26 69.65% 3 F:RNA binding; F:tRNA-specific adenosine deaminase activity; P:tRNA processing    
contig05979 solute carrier family (neutral amino acid y+ system) member 10 240 20 1.90E-29 94.30% 8 C:integral to plasma membrane; C:dendrite; P:L-serine transport; F:D-serine transmembrane transporter activity; F:protein binding; F:L-serine transmembrane transporter activity; P:D-serine transport; P:D-alanine transport    
contig05980 replication protein 70kda 260 20 6.88E-19 56.90% 2 F:binding; C:nucleus    
contig05981 novel protein 880 1 1.64E-20 59.00% 0      
contig05982 ---NA--- 248 0     0      
contig05983 ---NA--- 269 0     0      
contig05984 ---NA--- 200 0     0      
contig05985 ---NA--- 214 0     0      
contig05986 ---NA--- 231 0     0      
contig05987 ---NA--- 216 0     0      
contig05988 hydroxysteroid (17-beta) dehydrogenase 7 241 20 1.15E-26 84.05% 9 F:estradiol 17-beta-dehydrogenase activity; ; F:prolactin receptor binding; P:female pregnancy; P:signal transduction; P:cholesterol biosynthetic process; C:integral to membrane; F:3-keto sterol reductase activity; C:endoplasmic reticulum EC:1.1.1.62; EC:1.1.1.270  
contig05989 peroxisome proliferator-activated receptor beta 246 20 9.08E-16 98.10% 8 F:zinc ion binding; P:zinc ion transport; P:regulation of transcription, DNA-dependent; F:sequence-specific DNA binding; F:transcription factor activity; P:transcription antitermination; F:steroid hormone receptor activity; C:nucleus    
contig05990 ---NA--- 313 0     0      
contig05991 ---NA--- 241 0     0      
contig05992 ---NA--- 246 0     0      
contig05993 von willebrand factor a domain-containing protein 2 precursor (a domain-containing protein matrilin and collagen) (colon cancer secreted protein 2) (ccsp-2) 254 20 3.21E-24 82.85% 2 F:identical protein binding; C:extracellular region    
contig05994 ---NA--- 269 0     0      
contig05995 sept2 protein 300 20 1.79E-19 90.80% 6 F:GTP binding; F:protein binding; P:cell cycle; C:septin complex; C:nucleus; P:cell division    
contig05996 sphingomyelin phosphodiesterase isoform cra_a 576 20 2.46E-51 73.25% 20 P:sphingomyelin metabolic process; F:hydrolase activity; F:metal ion binding; C:integral to membrane; C:membrane; P:peptide hormone secretion; P:cell cycle; F:sphingomyelin phosphodiesterase activity; C:Golgi membrane; P:multicellular organismal development; C:Golgi cis cisterna; P:P; P:signal transduction; P:response to stress; C:Golgi apparatus; C:membrane fraction; F:magnesium ion binding; C:plasma membrane; C:C; P:sphingomyelin catabolic process    
contig05997 novel protein 284 3 7.92E-12 72.00% 0      
contig05998 ---NA--- 336 0     0      
contig05999 edem2 protein 285 4 2.63E-10 90.50% 2 F:calcium ion binding; C:membrane    
contig06000 ---NA--- 137 0     0      
100 Rows returned.
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