Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 4901 - 5000:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig04901 brca1 associated ring domain 1 904 20 5.92E-29 48.55% 6 F:protein binding; P:negative regulation of biological process; P:cellular metabolic process; C:intracellular part; P:regulation of cellular process; P:regulation of metabolic process    
contig04902 chromosome 6 open reading frame 182 611 20 2.31E-12 57.35% 3 F:F; P:P; C:C    
contig04903 ---NA--- 170 0     0      
contig04904 usick-kaufman syndrome 246 20 8.77E-19 58.95% 8 F:binding; P:sensory perception; P:pigment granule aggregation in cell center; P:heart looping; P:cilium assembly; P:intracellular transport; P:determination of left/right symmetry; P:convergent extension involved in gastrulation    
contig04905 ---NA--- 280 0     0      
contig04906 ---NA--- 264 0     0      
contig04907 prostaglandin i2 synthase 297 20 1.98E-26 72.20% 5 P:lipid metabolic process; P:cellular biosynthetic process; F:metal ion binding; F:prostaglandin-I synthase activity; C:membrane EC:5.3.99.4  
contig04908 fusion (involved in t(12 16) in malignant liposarcoma) 275 20 3.03E-19 96.00% 9 C:cytoplasm; F:DNA binding; F:RNA binding; F:protein binding; P:positive regulation of transcription from RNA polymerase II promoter; F:transcription activator activity; C:nucleus; F:zinc ion binding; F:nucleotide binding    
contig04909 ---NA--- 253 0     0      
contig04910 chromosome 1 open reading frame 59 538 20 4.59E-54 69.50% 2 F:F; P:P    
contig04911 ---NA--- 187 0     0      
contig04912 ---NA--- 358 0     0      
contig04913 huntingtin interacting protein 1 related 464 20 2.74E-63 92.70% 6 C:cytoskeleton; C:coated pit; C:membrane fraction; F:phospholipid binding; F:actin binding; P:receptor-mediated endocytosis    
contig04914 ---NA--- 511 0     0      
contig04915 ---NA--- 448 0     0      
contig04916 dipeptidyl-peptidase 3 605 20 1.29E-92 84.95% 6 C:cytoplasm; F:metallopeptidase activity; P:proteolysis; F:zinc ion binding; F:aminopeptidase activity; F:dipeptidyl-peptidase III activity EC:3.4.11.0; EC:3.4.14.4  
contig04917 ceroid- neuronal 8 294 20 4.26E-37 78.50% 26 P:cellular protein catabolic process; P:neurofilament cytoskeleton organization; P:musculoskeletal movement; C:ER-Golgi intermediate compartment membrane; P:lipid transport; P:ceramide biosynthetic process; P:age-dependent response to oxidative stress; P:social behavior; P:photoreceptor cell maintenance; P:cholesterol metabolic process; C:integral to membrane; C:endoplasmic reticulum membrane; P:associative learning; P:neuromuscular process controlling posture; P:adult walking behavior; P:negative regulation of proteolysis; P:retina development in camera-type eye; P:regulation of cell size; P:neuromuscular process controlling balance; P:negative regulation of transferase activity; P:lysosome organization; P:mitochondrial membrane organization; P:glutamate uptake during transmission of nerve impulse; P:phospholipid metabolic process; P:spinal cord motor neuron differentiation; P:negative regulation of apoptosis    
contig04918 protein 317 20 1.13E-29 63.40% 1 F:DNA binding    
contig04919 ---NA--- 296 0     0      
contig04920 protein kinase-like protein 196 603 20 5.84E-53 76.05% 3 F:protein kinase activity; C:integral to membrane; F:nucleotide binding    
contig04921 ---NA--- 256 0     0      
contig04922 ---NA--- 490 0     0      
contig04923 smc2 protein 402 19 1.37E-19 73.53% 7 P:DNA metabolic process; F:ATPase activity; F:protein binding; P:mitosis; P:chromosome organization; F:ATP binding; C:chromosome    
contig04924 ---NA--- 234 0     0      
contig04925 ---NA--- 207 0     0      
contig04926 ---NA--- 257 0     0      
contig04927 ---NA--- 801 0     0      
contig04928 ---NA--- 399 0     0      
contig04929 ubiquitin-conjugating enzyme e2l 3 621 20 2.00E-51 97.40% 3 F:ubiquitin-protein ligase activity; P:ubiquitin cycle; P:regulation of protein metabolic process EC:6.3.2.19  
contig04930 ---NA--- 688 0     0      
contig04931 transmembrane phosphatase with tensin homology 490 20 2.62E-87 84.95% 8 F:protein tyrosine phosphatase activity; F:protein tyrosine/serine/threonine phosphatase activity; C:Golgi apparatus; P:protein amino acid dephosphorylation; P:cation transport; C:integral to membrane; F:cation channel activity; C:endoplasmic reticulum EC:3.1.3.48  
contig04932 ---NA--- 197 0     0      
contig04933 bromodomain phd finger transcription factor 261 15 7.35E-05 96.87% 13 F:DNA-dependent ATPase activity; F:sequence-specific DNA binding; P:chromatin remodeling; C:nucleus; F:transcription regulator activity; P:positive regulation of gene-specific transcription; C:cytoplasm; F:zinc ion binding; F:transcription factor binding; P:regulation of transcription, DNA-dependent; F:metal ion binding; P:brain development; P:negative regulation of transcription from RNA polymerase II promoter    
contig04934 ---NA--- 274 0     0      
contig04935 ---NA--- 179 0     0      
contig04936 bloom syndrome 704 20 2.49E-118 80.85% 27 P:G2 phase of mitotic cell cycle; P:G2/M transition DNA damage checkpoint; C:chromosome, telomeric region; F:p53 binding; P:positive regulation of transcription; P:response to X-ray; C:PML body; F:ATP-dependent 3'-5' DNA helicase activity; P:negative regulation of mitotic recombination; P:double-strand break repair via homologous recombination; P:regulation of cyclin-dependent protein kinase activity; C:nucleolus; P:protein oligomerization; P:negative regulation of cell division; F:DNA strand annealing activity; P:replication fork protection; F:G-quadruplex DNA binding; P:telomere maintenance; C:lateral element; C:nuclear matrix; P:regulation of binding; P:alpha-beta T cell differentiation; F:bubble DNA binding; F:ATP binding; F:four-way junction helicase activity; P:positive regulation of alpha-beta T cell proliferation; C:replication fork    
contig04937 ---NA--- 145 0     0      
contig04938 ---NA--- 246 0     0      
contig04939 ---NA--- 251 0     0      
contig04940 cyclin e2 317 20 8.13E-28 67.65% 5 P:DNA replication initiation; P:cell cycle checkpoint; F:protein binding; F:cyclin-dependent protein kinase regulator activity; P:regulation of cyclin-dependent protein kinase activity    
contig04941 hypoxia up-regulated 1 413 20 3.41E-63 80.65% 6 C:extracellular space; P:protein folding; C:endoplasmic reticulum lumen; F:protein binding; F:ATP binding; P:response to hypoxia    
contig04942 ---NA--- 798 0     0      
contig04943 ubiquitin-activating enzyme e1c isoform 1 251 20 2.37E-32 98.15% 0      
contig04944 wd repeat domain 41 322 20 1.37E-36 70.10% 0      
contig04945 aspartylglucosaminidase 525 20 3.80E-52 76.75% 5 C:extracellular space; F:protein self-association; C:lysosome; F:N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity; P:protein deglycosylation EC:3.5.1.26  
contig04946 ---NA--- 381 0     0      
contig04947 ---NA--- 305 0     0      
contig04948 ---NA--- 216 0     0      
contig04949 nin one binding protein 264 20 2.67E-39 90.65% 6 C:cytoplasm; C:nucleolus; P:maturation of SSU-rRNA; F:protein binding; F:zinc ion binding; P:ribosomal small subunit biogenesis    
contig04950 ---NA--- 262 0     0      
contig04951 ---NA--- 355 0     0      
contig04952 hydroxysteroid dehydrogenase like 2 288 20 1.58E-23 65.85% 6 F:binding; F:oxidoreductase activity; ; P:metabolic process; F:catalytic activity; C:C    
contig04953 unnamed protein product [Tetraodon nigroviridis] 262 1 6.40E-25 76.00% 0      
contig04954 u2-associated sr140 protein 313 20 9.60E-34 96.40% 3 P:RNA processing; F:nucleotide binding; F:RNA binding    
contig04955 enolase 1 isoform b 400 20 1.01E-70 95.30% 6 C:phosphopyruvate hydratase complex; C:plasma membrane; F:phosphopyruvate hydratase activity; F:magnesium ion binding; P:glycolysis; F:plasminogen activator activity EC:4.2.1.11; EC:3.4.21.68; EC:3.4.21.73  
contig04956 ---NA--- 326 0     0      
contig04957 ---NA--- 258 0     0      
contig04958 deah (asp-glu-ala-his) box polypeptide 15 310 20 6.89E-40 100.00% 7 P:RNA splicing; F:RNA helicase activity; F:ATP-dependent helicase activity; F:nucleic acid binding; P:mRNA processing; F:ATP binding; C:U12-type spliceosomal complex    
contig04959 ---NA--- 254 0     0      
contig04960 ---NA--- 318 0     0      
contig04961 ---NA--- 392 0     0      
contig04962 ---NA--- 661 0     0      
contig04963 ---NA--- 370 0     0      
contig04964 stromal antigen 1 357 20 1.50E-42 68.80% 3 P:cellular process; C:nucleus; F:protein binding    
contig04965 ---NA--- 540 0     0      
contig04966 ---NA--- 409 0     0      
contig04967 peptidylprolyl isomerase -like 4 256 20 1.09E-40 94.45% 5 P:protein folding; F:RNA binding; F:peptidyl-prolyl cis-trans isomerase activity; C:nucleus; F:nucleotide binding EC:5.2.1.8  
contig04968 ---NA--- 254 0     0      
contig04969 chromatin modifying protein 6 908 20 2.31E-65 89.20% 4 F:protein binding; C:membrane attack complex; C:endosome membrane; P:protein transport    
contig04970 replication factor c (activator 1) 37kda 736 20 7.53E-108 91.15% 6 P:DNA replication; F:DNA clamp loader activity; C:DNA replication factor C complex; P:retina development in camera-type eye; F:ATP binding; C:nucleus    
contig04971 proline racemase-like 271 17 7.51E-10 75.35% 2 F:proline racemase activity; F:isomerase activity    
contig04972 ---NA--- 268 0     0      
contig04973 mterf domain containing 2 314 20 1.82E-16 72.35% 0      
contig04974 ---NA--- 478 0     0      
contig04975 unnamed protein product [Tetraodon nigroviridis] 278 1 7.99E-04 96.00% 0      
contig04976 ---NA--- 266 0     0      
contig04977 integrator complex subunit 6 445 20 5.97E-31 84.10% 8 C:extracellular space; F:ATP-dependent helicase activity; F:nucleic acid binding; F:protein binding; F:ATP binding; P:snRNA processing; F:transmembrane receptor activity; C:integrator complex    
contig04978 ---NA--- 275 0     0      
contig04979 eukaryotic translation termination factor 1 533 20 8.79E-64 98.60% 6 C:cytoplasm; F:translation release factor activity, codon specific; F:RNA binding; F:protein binding; P:regulation of translational termination; F:ribosome binding    
contig04980 vacuolar protein sorting 4b 266 20 4.01E-11 90.20% 12 P:response to lipid; C:cytosol; F:ATPase activity, coupled; P:potassium ion transport; P:intracellular cholesterol transport; F:protein C-terminus binding; C:late endosome membrane; P:endosome organization; C:vacuolar membrane; F:ATP binding; C:nucleus; P:endosome to lysosome transport via multivesicular body sorting pathway    
contig04981 plastin 3 (t isoform) 258 20 3.09E-11 100.00% 3 P:actin filament organization; F:actin binding; F:calcium ion binding    
contig04982 ---NA--- 745 0     0      
contig04983 acyl-coenzyme a short branched chain 115 20 1.64E-12 93.55% 5 C:mitochondrial matrix; P:electron transport; F:acyl-CoA dehydrogenase activity; P:fatty acid metabolic process; F:FAD binding EC:1.3.99.3  
contig04984 ---NA--- 331 0     0      
contig04985 ---NA--- 241 0     0      
contig04986 ---NA--- 252 0     0      
contig04987 ---NA--- 299 0     0      
contig04988 anaphase promoting complex subunit 10 402 20 3.37E-34 97.75% 9 P:ubiquitin-dependent protein catabolic process; P:G2/M transition of mitotic cell cycle; P:cell division; F:ubiquitin-protein ligase activity; P:mitotic anaphase; F:protein binding; P:ubiquitin cycle; P:regulation of mitotic metaphase/anaphase transition; C:anaphase-promoting complex EC:6.3.2.19  
contig04989 unnamed protein product [Tetraodon nigroviridis] 246 1 1.36E-11 73.00% 0      
contig04990 ---NA--- 607 0     0      
contig04991 zinc finger and btb domain containing 11 253 15 3.93E-14 90.93% 5 F:DNA binding; F:protein binding; C:nucleus; F:zinc ion binding; P:regulation of transcription, DNA-dependent    
contig04992 ---NA--- 243 0     0      
contig04993 ---NA--- 287 0     0      
contig04994 ---NA--- 282 0     0      
contig04995 ---NA--- 247 0     0      
contig04996 ---NA--- 246 0     0      
contig04997 aquarius homolog 835 20 4.36E-36 58.40% 8 F:RNA binding; C:spliceosomal complex; F:F; P:RNA splicing; P:mRNA processing; P:P; C:C; C:nucleus    
contig04998 ---NA--- 322 0     0      
contig04999 ---NA--- 912 0     0      
contig05000 ---NA--- 230 0     0      
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