Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 401 - 500:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig00401 u2 small nuclear ribonucleoprotein b 934 20 2.58E-99 88.10% 5 C:U2 snRNP; ; F:protein binding; P:nuclear mRNA splicing, via spliceosome; F:nucleotide binding    
contig00402 mgc69517 protein 287 20 4.17E-32 83.00% 4 F:zinc ion binding; F:nucleic acid binding; C:intracellular; F:nucleotide binding    
contig00403 riken cdna 1810013l24 gene 235 20 1.37E-35 91.45% 2 F:F; P:P    
contig00404 dtw domain containing 2 1095 20 1.17E-112 77.10% 0      
contig00405 cdkn2a interacting protein n-terminal like 283 20 3.65E-33 66.50% 1 C:nucleus    
contig00406 glycogen synthase 1 245 20 6.69E-43 97.35% 4 P:glycogen biosynthetic process; F:protein binding; F:glycogen (starch) synthase activity; P:heart development EC:2.4.1.11  
contig00407 hsp70-interacting protein 339 20 7.33E-50 82.85% 3 F:protein binding; P:protein folding; F:enzyme inhibitor activity    
contig00408 ---NA--- 377 0     0      
contig00409 nematode astacin protease family member (nas-4) 1079 20 1.68E-55 55.75% 1 F:peptidase activity    
contig00410 ---NA--- 185 0     0      
contig00411 cyclin d-type binding-protein 1 965 20 8.99E-95 69.85% 1 C:nucleus    
contig00412 ribosomal protein l18 619 20 3.01E-92 95.75% 4 F:structural constituent of ribosome; F:RNA binding; C:cytosolic large ribosomal subunit; P:translation EC:3.6.5.3  
contig00413 ---NA--- 272 0     0      
contig00414 ---NA--- 822 0     0      
contig00415 cell division cycle associated 8 1614 20 1.54E-96 61.70% 4 P:cell cycle; C:protein complex; C:chromosome; F:protein binding    
contig00416 atp h+ mitochondrial f1 alpha subunit cardiac muscle 1023 20 3.55E-169 96.30% 9 C:proton-transporting ATP synthase complex, catalytic core F(1); F:hydrogen ion transporting ATP synthase activity, rotational mechanism; C:mitochondrial inner membrane; P:ATP synthesis coupled proton transport; F:metal ion binding; C:extracellular space; F:ATP binding; F:protein binding; F:proton-transporting ATPase activity, rotational mechanism EC:3.6.3.14  
contig00417 rad21 homolog 453 20 4.08E-32 93.35% 12 P:translation; C:ribosome; P:apoptosis; C:nuclear chromosome; F:calcium ion binding; P:mitotic sister chromatid cohesion; F:rRNA binding; P:double-strand break repair; F:structural constituent of ribosome; P:reciprocal meiotic recombination; P:cell division; F:protein binding EC:3.6.5.3  
contig00418 ---NA--- 579 0     0      
contig00419 hypothetical loc548371 609 20 2.63E-24 75.40% 2 F:F; C:C    
contig00420 cdc25b phosphatase 886 20 2.04E-127 78.80% 4 F:protein tyrosine phosphatase activity; C:intracellular; P:protein amino acid dephosphorylation; P:M phase of mitotic cell cycle EC:3.1.3.48  
contig00421 karyopherin beta 1 1790 20 0 97.20% 10 F:protein transporter activity; F:zinc ion binding; P:protein import into nucleus, translocation; C:nuclear pore; F:nuclear localization sequence binding; P:NLS-bearing substrate import into nucleus; F:protein binding; P:ribosomal protein import into nucleus; C:cytoplasm; P:protein import into nucleus, docking    
contig00422 btb domain containing 6 465 20 6.15E-44 95.65% 1 F:protein binding    
contig00423 brg1 protein 476 20 2.12E-15 78.65% 17 F:protein N-terminus binding; P:blastocyst growth; P:glial cell fate determination; P:forebrain development; F:identical protein binding; P:negative regulation of transcription from RNA polymerase II promoter; P:hindbrain development; F:ATP binding; F:transcription factor activity; C:heterochromatin; F:helicase activity; P:methylation-dependent chromatin silencing; P:blastocyst hatching; F:transcription coactivator activity; C:nucleoplasm; F:hydrolase activity; F:chromatin binding    
contig00424 nuclear transport factor 2 1238 20 1.12E-61 95.85% 5 C:nuclear pore; P:protein import into nucleus; F:protein binding; F:protein transporter activity; C:cytosol    
contig00425 ---NA--- 463 0     0      
contig00426 ---NA--- 376 0     0      
contig00427 regulatory factor x-associated protein 624 19 2.68E-11 91.79% 3 F:transcription coactivator activity; F:transcription factor activity; C:nucleus    
contig00428 atp synthase subunit mitochondrial 420 14 2.00E-10 88.93% 0      
contig00429 ---NA--- 142 0     0      
contig00430 cytochrome b-c1 complex subunit 8 437 20 2.37E-40 81.75% 4 F:ubiquinol-cytochrome-c reductase activity; P:electron transport; P:transport; C:mitochondrial respiratory chain EC:1.10.2.2  
contig00431 glutaredoxin 3 1585 20 8.38E-148 82.95% 5 P:cell redox homeostasis; C:cytoplasm; F:electron carrier activity; F:protein disulfide oxidoreductase activity; F:protein binding    
contig00432 ---NA--- 366 0     0      
contig00433 ---NA--- 279 0     0      
contig00434 ---NA--- 360 0     0      
contig00435 heterogeneous nuclear ribonucleoprotein a1 632 20 1.52E-102 86.05% 6 P:RNA splicing; C:spliceosomal complex; F:RNA binding; P:mRNA transport; P:mRNA processing; F:nucleotide binding    
contig00436 loc553384 protein 584 4 1.41E-05 59.00% 0      
contig00437 eukaryotic translation initiation factor 5 2109 20 1.41E-180 87.15% 5 F:GTP binding; P:regulation of translational initiation; F:translation initiation factor activity; C:cytosol; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig00438 proteasome ( macropain) 26s non- 12 362 20 6.06E-44 95.75% 3 C:proteasome regulatory particle; P:proteasomal ubiquitin-dependent protein catabolic process; C:cytosol    
contig00439 cullin 3 1477 20 5.18E-120 96.00% 5 F:ubiquitin protein ligase binding; C:Golgi apparatus; C:cullin-RING ubiquitin ligase complex; P:ubiquitin-dependent protein catabolic process; C:nucleus    
contig00440 ---NA--- 501 0     0      
contig00441 isocitrate dehydrogenase 3 (nad+) alpha 1716 20 0 92.95% 5 F:manganese ion binding; F:magnesium ion binding; P:tricarboxylic acid cycle; F:isocitrate dehydrogenase (NAD+) activity; C:mitochondrion EC:1.1.1.41  
contig00442 prp19 pso4 pre-mrna processing factor 19 homolog ( cerevisiae) 1370 20 0 93.70% 15 P:DNA repair; P:inner cell mass cell proliferation; P:lipid biosynthetic process; P:RNA splicing; P:positive regulation of astrocyte differentiation; F:DNA binding; F:ubiquitin-protein ligase activity; P:protein ubiquitination; C:spliceosomal complex; F:protein binding; C:ubiquitin ligase complex; P:positive regulation of neuron differentiation; P:mRNA processing; C:lipid particle; P:negative regulation of neuron differentiation EC:6.3.2.19  
contig00443 kinesin family member 2c 385 20 8.55E-14 68.55% 8 C:microtubule associated complex; P:mitotic sister chromatid segregation; P:mitotic anaphase A; P:mitotic spindle organization; F:ATP binding; F:motor activity; C:kinetochore microtubule; C:nucleus    
contig00444 ---NA--- 135 0     0      
contig00445 ---NA--- 147 0     0      
contig00446 ---NA--- 123 0     0      
contig00447 acetyl-coenzyme a carboxylase beta 261 20 2.26E-38 85.45% 14 C:biotin carboxylase complex; F:acetyl-CoA carboxylase activity; P:fatty acid biosynthetic process; P:phosphoenolpyruvate-dependent sugar phosphotransferase system; C:soluble fraction; C:mitochondrion; F:manganese ion binding; P:acetyl-CoA metabolic process; F:biotin binding; F:ATP binding; P:response to organic cyclic substance; F:biotin carboxylase activity; P:response to drug; C:membrane EC:6.4.1.2; EC:6.3.4.14  
contig00448 chondroitin 6-sulfotransferase 270 20 1.98E-38 78.90% 7 P:positive regulation of cellular component movement; F:proteoglycan sulfotransferase activity; F:chondroitin 6-sulfotransferase activity; C:membrane part; P:axon regeneration in the peripheral nervous system; P:chondroitin sulfate biosynthetic process; C:Golgi apparatus EC:2.8.2.17  
contig00449 lymphoid-specific 671 20 2.36E-89 86.15% 3 F:ATP binding; F:DNA binding; F:helicase activity    
contig00450 very low density lipoprotein receptor 1301 20 2.19E-71 80.50% 8 F:receptor activity; C:extracellular space; C:membrane fraction; P:positive regulation of protein kinase activity; P:transport; F:calcium ion binding; P:steroid metabolic process; C:integral to membrane    
contig00451 ---NA--- 389 0     0      
contig00452 transmembrane and coiled-coil domains 7 1088 20 5.37E-110 69.80% 1 C:membrane    
contig00453 u3 small nucleolar interacting protein 2 1526 20 0 81.40% 4 C:small nucleolar ribonucleoprotein complex; F:RNA binding; C:small nuclear ribonucleoprotein complex; P:rRNA processing    
contig00454 polymerase iii (dna directed) polypeptide d 1108 20 1.12E-110 72.20% 3 P:regulation of cell cycle; P:transcription; C:nucleus    
contig00455 importin 5 1442 20 7.09E-66 89.65% 5 C:cytoplasm; C:nuclear pore; F:binding; P:protein import into nucleus, docking; F:protein transporter activity    
contig00456 ---NA--- 131 0     0      
contig00457 succinate dehydrogenase subunit integral membrane protein 640 20 2.30E-61 71.15% 7 C:extracellular space; F:succinate dehydrogenase activity; C:mitochondrial inner membrane; F:electron carrier activity; F:iron ion binding; F:heme binding; P:tricarboxylic acid cycle EC:1.3.99.1  
contig00458 rho gtpase activating protein 11a 270 20 3.24E-29 76.60% 5 F:GTPase activator activity; F:F; P:signal transduction; C:intracellular; C:C    
contig00459 ---NA--- 186 0     0      
contig00460 elongation factor 1 homolog ( cerevisiae) 444 20 9.85E-34 94.65% 4 F:translation elongation factor activity; C:nucleus; F:zinc ion binding; P:regulation of transcription, DNA-dependent    
contig00461 threonyl-trna synthetase 483 20 1.13E-21 72.70% 4 F:threonine-tRNA ligase activity; F:protein binding; P:threonyl-tRNA aminoacylation; F:nucleotide binding EC:6.1.1.3  
contig00462 guanine nucleotide binding 3 1072 20 9.73E-56 66.25% 2 C:nucleus; F:nucleotide binding    
contig00463 ---NA--- 163 0     0      
contig00464 ---NA--- 877 0     0      
contig00465 t-complex 1 1964 20 5.62E-152 95.35% 7 C:nuclear heterochromatin; C:chaperonin-containing T-complex; P:tubulin complex assembly; F:ATP binding; P:spermatid development; F:unfolded protein binding; C:pericentriolar material    
contig00466 nucleolar complex associated 4 homolog ( cerevisiae) 851 20 1.26E-79 60.90% 2 C:membrane attack complex; C:nucleus    
contig00467 seryl-trna synthetase 543 20 5.65E-16 93.45% 4 C:cytoplasm; F:ATP binding; P:seryl-tRNA aminoacylation; F:serine-tRNA ligase activity EC:6.1.1.11  
contig00468 thymocyte nuclear protein 1 785 20 2.16E-103 77.35% 1 C:nucleus    
contig00469 transmembrane protein 220 687 20 2.41E-50 58.40% 2 C:integral to membrane; C:membrane    
contig00470 interleukin enhancer binding factor 2 718 20 8.53E-100 94.60% 10 C:nucleolus; P:immune response; F:DNA binding; F:double-stranded RNA binding; F:ATP binding; F:transferase activity; F:protein binding; P:transcription antitermination; P:positive regulation of transcription, DNA-dependent; F:RNA polymerase II transcription factor activity    
contig00471 jtv1 gene 996 20 9.59E-71 76.30% 4 P:translation; F:F; P:P; C:C    
contig00472 methylcrotonoyl-coenzyme a carboxylase 2 714 20 3.67E-64 95.20% 3 F:methylcrotonoyl-CoA carboxylase activity; C:mitochondrial matrix; P:leucine catabolic process EC:6.4.1.4  
contig00473 si:ch211- protein 584 2 2.47E-18 74.00% 0      
contig00474 m-phase phosphoprotein 10 (u3 small nucleolar ribonucleoprotein) 453 20 5.31E-39 72.85% 4 P:RNA splicing; C:small nucleolar ribonucleoprotein complex; ; F:protein binding    
contig00475 cdc5 cell division cycle 5-like ( pombe) 443 20 7.05E-48 82.15% 12 F:RNA binding; P:cell cycle; P:regulation of transcription, DNA-dependent; C:nuclear speck; P:RNA splicing; P:cell division; F:DNA binding; P:protein targeting; C:spliceosomal complex; F:protein domain specific binding; P:mRNA processing; C:cytoplasm    
contig00476 abhydrolase domain containing 14a 1720 20 6.11E-99 67.35% 3 C:membrane attack complex; C:cytoplasm; F:hydrolase activity    
contig00477 ribosomal p1 487 20 4.00E-27 96.75% 5 F:structural constituent of ribosome; F:RNA binding; F:protein binding; C:cytosolic large ribosomal subunit; P:translational elongation    
contig00478 ---NA--- 800 0     0      
contig00479 u3 small nucleolar homolog 1215 20 2.54E-159 92.90% 6 C:nucleolus; F:RNA binding; F:protein binding; F:snoRNP binding; P:rRNA processing; C:ribonucleoprotein complex    
contig00480 thioredoxin domain containing 12 (endoplasmic reticulum) 324 20 1.41E-40 94.85% 3 P:cell redox homeostasis; F:protein-disulfide reductase (glutathione) activity; C:endoplasmic reticulum lumen EC:1.8.4.2  
contig00481 interferon-stimulated 20 kda exonuclease-like 1 527 20 3.54E-70 73.25% 3 F:nucleic acid binding; C:intracellular; F:exonuclease activity    
contig00482 ---NA--- 728 0     0      
contig00483 novel protein 258 1 8.98E-19 70.00% 0      
contig00484 eukaryotic translation initiation factor subunit 3 52kda 1490 20 0 97.35% 5 P:translational initiation; F:GTP binding; F:protein binding; F:translation initiation factor activity; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig00485 glutamyl-prolyl trna synthetase isoform 2 239 20 6.11E-36 96.50% 9 C:cytoplasm; P:protein complex assembly; F:proline-tRNA ligase activity; P:prolyl-tRNA aminoacylation; C:soluble fraction; F:glutamate-tRNA ligase activity; P:glutamyl-tRNA aminoacylation; F:protein binding; F:ATP binding EC:6.1.1.15; EC:6.1.1.17  
contig00486 ---NA--- 303 0     0      
contig00487 splicing factor subunit 1 658 20 1.12E-85 92.70% 5 P:protein modification process; C:spliceosomal complex; F:RNA binding; F:protein binding; P:nuclear mRNA 3'-splice site recognition    
contig00488 kiaa0837 protein 774 20 3.81E-75 90.60% 11 F:long-chain-fatty-acid-CoA ligase activity; C:integral to membrane; P:acyl-CoA metabolic process; C:peroxisomal membrane; C:mitochondrial outer membrane; C:microsome; F:protein binding; F:magnesium ion binding; P:neuroblast proliferation; C:endoplasmic reticulum membrane; C:plasma membrane EC:6.2.1.3  
contig00489 thioredoxin domain containing 10 414 20 1.25E-57 92.75% 5 C:endoplasmic reticulum membrane; P:cell redox homeostasis; F:calcium ion binding; F:protein disulfide isomerase activity; C:integral to membrane EC:5.3.4.1  
contig00490 wd repeat domain 92 253 20 1.14E-29 93.20% 6 C:cytoplasm; F:aminoacyl-tRNA ligase activity; P:apoptosis; F:calcium ion binding; F:ATP binding; P:tRNA aminoacylation for protein translation    
contig00491 prkr interacting protein 1 (il11 inducible) 1086 20 2.63E-48 86.90% 6 C:nucleolus; F:double-stranded RNA binding; F:protein kinase inhibitor activity; P:negative regulation of phosphorylation; F:protein kinase binding; P:negative regulation of protein kinase activity    
contig00492 ---NA--- 275 0     0      
contig00493 mitochondrial ribosomal protein s26 967 18 2.06E-14 86.89% 5 C:mitochondrial small ribosomal subunit; P:ribosome biogenesis; F:structural constituent of ribosome; P:DNA damage response, detection of DNA damage; P:peptide biosynthetic process    
contig00494 ---NA--- 275 0     0      
contig00495 ---NA--- 466 0     0      
contig00496 cystatin variant 1 455 20 1.73E-06 57.90% 4 C:extracellular space; F:cysteine-type endopeptidase inhibitor activity; F:endopeptidase inhibitor activity; C:extracellular region    
contig00497 inhibitor of kappa light polypeptide gene enhancer in b- kinase complex-associated protein 720 20 1.68E-64 68.05% 13 P:regulation of transcription from RNA polymerase II promoter; F:signal transducer activity; C:nucleolus; C:DNA-directed RNA polymerase II, holoenzyme; F:phosphorylase kinase regulator activity; C:transcription elongation factor complex; P:immune response; F:DNA binding; P:protein complex assembly; F:protein binding; F:RNA polymerase II transcription elongation factor activity; C:cytoplasm; P:protein amino acid phosphorylation    
contig00498 ---NA--- 424 0     0      
contig00499 zinc dhhc-type containing 20 1705 20 1.89E-68 80.75% 3 F:acyltransferase activity; C:integral to membrane; F:zinc ion binding    
contig00500 zinc dhhc-type containing 3 295 20 1.16E-42 92.70% 7 F:zinc ion binding; P:zinc ion transport; C:integral to membrane; C:Golgi membrane; F:palmitoyltransferase activity; P:protein palmitoylation; P:protein targeting    
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