Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 4301 - 4400:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig04301 calcium homeostasis endoplasmic reticulum protein 417 20 2.44E-32 61.50% 3 F:nucleic acid binding; C:intracellular; P:cellular process    
contig04302 ---NA--- 351 0     0      
contig04303 ---NA--- 274 0     0      
contig04304 ---NA--- 181 0     0      
contig04305 ---NA--- 762 0     0      
contig04306 ---NA--- 254 0     0      
contig04307 chromosome 22 open reading frame 13 411 20 1.34E-59 84.05% 2 F:F; P:P    
contig04308 frizzled homolog 3-like 318 20 5.77E-31 93.30% 11 F:G-protein coupled receptor activity; C:extracellular space; P:inner ear morphogenesis; P:Wnt receptor signaling pathway; P:response to drug; P:establishment of planar polarity; F:protein binding; P:neural tube closure; C:membrane attack complex; P:G-protein coupled receptor protein signaling pathway; F:non-G-protein coupled 7TM receptor activity    
contig04309 ---NA--- 393 0     0      
contig04310 subfamily member 7 1589 20 8.70E-145 77.70% 2 P:protein folding; F:heat shock protein binding    
contig04311 gem (nuclear organelle) associated protein 5 349 20 2.25E-54 86.60% 7 C:cytoplasm; P:protein complex assembly; F:snRNA binding; C:spliceosomal complex; F:protein binding; C:nuclear body; P:spliceosomal snRNP assembly    
contig04312 jade3 protein 362 1 8.00E-04 52.00% 0      
contig04313 ---NA--- 123 0     0      
contig04314 dna photolyase 932 20 3.35E-99 74.25% 4 P:protein-chromophore linkage; P:DNA repair; F:DNA binding; F:deoxyribodipyrimidine photo-lyase activity EC:4.1.99.3  
contig04315 ---NA--- 109 0     0      
contig04316 ---NA--- 261 0     0      
contig04317 afg3 atpase family gene 3-like 2 526 20 6.24E-83 96.10% 9 C:mitochondrial inner membrane; F:metalloendopeptidase activity; P:protein catabolic process; F:ATP binding; F:unfolded protein binding; C:integral to membrane; F:nucleoside-triphosphatase activity; P:proteolysis; F:zinc ion binding EC:3.4.24.0; EC:3.6.1.15  
contig04318 ---NA--- 255 0     0      
contig04319 ---NA--- 819 0     0      
contig04320 ---NA--- 256 0     0      
contig04321 synaptosomal-associated protein 23 321 3 4.16E-08 89.00% 0      
contig04322 ---NA--- 267 0     0      
contig04323 isocitrate dehydrogenase 2 (nadp+) mitochondrial 370 20 8.90E-59 96.25% 6 F:manganese ion binding; C:mitochondrial inner membrane; F:isocitrate dehydrogenase (NADP+) activity; F:magnesium ion binding; P:tricarboxylic acid cycle; P:glyoxylate cycle EC:1.1.1.42  
contig04324 phosphoribosyl pyrophosphate synthetase 1 1848 20 6.19E-153 98.00% 13 P:purine base metabolic process; C:protein complex; C:soluble fraction; P:nucleoside metabolic process; F:GDP binding; F:ATP binding; P:nervous system development; P:AMP biosynthetic process; F:magnesium ion binding; F:ribose phosphate diphosphokinase activity; P:sensory perception of sound; F:AMP binding; F:sugar binding EC:2.7.6.1  
contig04325 ---NA--- 310 0     0      
contig04326 ---NA--- 246 0     0      
contig04327 ---NA--- 281 0     0      
contig04328 ---NA--- 329 0     0      
contig04329 transmembrane 9 superfamily member 2 514 20 3.54E-88 95.75% 4 C:extracellular space; C:integral to plasma membrane; C:endosome membrane; P:transport    
contig04330 wd repeat domain 1 758 20 1.28E-57 82.45% 6 C:cytoplasm; C:actin filament; F:actin binding; C:plasma membrane; P:actin filament fragmentation; C:nucleus    
contig04331 exportin crm1 homolog 301 20 1.89E-45 94.30% 11 P:response to virus; F:protein transporter activity; F:RNA binding; C:annulate lamellae; P:protein export from nucleus; C:nuclear pore; F:protein binding; P:regulation of protein catabolic process; C:cytoplasm; P:protein import into nucleus, docking; P:mRNA transport    
contig04332 ---NA--- 199 0     0      
contig04333 general transcription factor polypeptide 52kda 640 20 5.44E-79 89.90% 54 F:valine-tRNA ligase activity; C:MHC class I protein complex; P:protein amino acid glycosylation; P:protein amino acid phosphorylation; P:protein folding; F:zinc ion binding; C:actin filament; F:tumor necrosis factor receptor binding; F:steroid hormone receptor activity; P:cell adhesion; P:transcription from RNA polymerase II promoter; C:MHC class II protein complex; P:metal ion transport; C:phagocytic cup; C:PML body; ; P:regulation of small GTPase mediated signal transduction; F:ganglioside galactosyltransferase activity; P:immune response; P:cell morphogenesis; F:metal ion transmembrane transporter activity; P:phosphate transport; F:extracellular matrix structural constituent; C:extracellular space; F:protein N-terminus binding; P:androgen receptor signaling pathway; F:calcium ion binding; C:integral to membrane; P:negative regulation of transcription, DNA-dependent; C:Golgi apparatus; P:transmembrane receptor protein tyrosine kinase signaling pathway; F:RNA polymerase II transcription factor activity; C:holo TFIIH complex; C:ruffle; C:prefoldin complex; F:sequence-specific DNA binding; P:valyl-tRNA aminoacylation; P:apoptosis; F:steroid binding; C:heterochromatin; F:unfolded protein binding; F:transcription factor activity; P:cytokinesis after mitosis; F:transmembrane receptor protein tyrosine kinase activity; P:antigen processing and presentation of endogenous peptide antigen via MHC class I; C:collagen; F:protein homodimerization activity; F:transcription factor binding; F:ATP binding; P:actin filament bundle assembly; F:androgen receptor binding; F:transcription repressor activity; P:DNA repair; F:guanyl-nucleotide exchange factor activity EC:6.1.1.9; EC:2.4.1.62; EC:2.7.10.1  
contig04334 pol polyprotein 239 20 2.05E-07 69.00% 9 C:chromatin; F:chromatin binding; C:nucleus; F:nucleic acid binding; P:chromatin assembly or disassembly; F:zinc ion binding; F:aspartic-type endopeptidase activity; P:proteolysis; F:peptidase activity    
contig04335 ---NA--- 286 0     0      
contig04336 ---NA--- 264 0     0      
contig04337 chromatin modifying protein 6 249 20 1.95E-10 91.65% 4 F:protein binding; C:membrane attack complex; C:endosome membrane; P:protein transport    
contig04338 small subunit processome homolog 276 20 7.97E-12 91.25% 2 F:F; P:P    
contig04339 ww domain-containing binding protein 4 467 15 3.08E-11 69.27% 4 F:nucleic acid binding; C:nucleus; F:zinc ion binding; F:protein binding    
contig04340 ubiquitin specific protease 14 343 20 1.29E-49 94.95% 9 C:soluble fraction; C:synaptosome; P:synaptic transmission; P:ubiquitin-dependent protein catabolic process; F:ubiquitin thiolesterase activity; P:ubiquitin cycle; F:tRNA guanylyltransferase activity; F:cysteine-type endopeptidase activity; F:endopeptidase inhibitor activity EC:3.1.2.15; EC:3.4.22.0  
contig04341 ---NA--- 491 0     0      
contig04342 deoxycytidine kinase 616 20 1.66E-34 79.40% 4 F:ATP binding; F:phosphotransferase activity, alcohol group as acceptor; P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; F:deoxycytidine kinase activity EC:2.7.1.0; EC:2.7.1.74  
contig04343 hyypothetical loc100191015 240 2 8.28E-09 75.50% 0      
contig04344 bmi1 polycomb ring finger oncogene 538 20 2.35E-77 87.00% 21 P:negative regulation of transcription from RNA polymerase II promoter; F:protein binding; F:zinc ion binding; P:humoral immune response; P:transcription antitermination; C:cytoplasm; C:ubiquitin ligase complex; P:histone ubiquitination; P:brain development; C:nuclear body; F:ubiquitin-protein ligase activity; P:somatic stem cell division; P:skeletal system development; P:zinc ion transport; P:segment specification; P:positive regulation of immature T cell proliferation in the thymus; F:chromatin binding; P:positive regulation of fibroblast proliferation; P:histone acetylation; F:transcription repressor activity; P:positive regulation of B cell proliferation EC:6.3.2.19  
contig04345 ---NA--- 262 0     0      
contig04346 translocase of inner mitochondrial membrane 8 homolog b 667 20 6.65E-38 85.60% 7 F:zinc ion binding; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; C:mitochondrial inner membrane presequence translocase complex; P:protein import into mitochondrial inner membrane; C:mitochondrial intermembrane space protein transporter complex; P:intracellular protein transmembrane transport; P:sensory perception of sound    
contig04347 ---NA--- 247 0     0      
contig04348 ---NA--- 293 0     0      
contig04349 ---NA--- 438 0     0      
contig04350 sperm associated antigen 7 833 20 4.62E-22 86.55% 3 C:nucleus; F:nucleic acid binding; F:protein binding    
contig04351 ---NA--- 256 0     0      
contig04352 kinectin 1 250 20 5.65E-26 68.70% 5 C:endoplasmic reticulum membrane; C:integral to plasma membrane; P:microtubule-based movement; F:kinesin binding; C:membrane fraction    
contig04353 ---NA--- 306 0     0      
contig04354 ---NA--- 261 0     0      
contig04355 metaxin 2 610 20 1.98E-88 90.30% 3 P:mitochondrial transport; C:mitochondrial outer membrane; P:protein transport    
contig04356 mps one binder kinase activator-like 3 331 20 7.15E-61 99.00% 5 C:membrane; C:Golgi apparatus; F:zinc ion binding; F:protein binding; P:transport    
contig04357 ---NA--- 297 0     0      
contig04358 ---NA--- 319 0     0      
contig04359 riken cdna isoform cra_a 247 20 6.71E-19 65.40% 2 P:P; C:C    
contig04360 ---NA--- 393 0     0      
contig04361 ---NA--- 259 0     0      
contig04362 member ras onocogene family 475 20 3.35E-26 84.00% 8 P:neurotransmitter secretion; F:GTP binding; C:intracellular; C:plasma membrane; F:transcription factor binding; P:small GTPase mediated signal transduction; P:regulation of transcription, DNA-dependent; P:protein transport    
contig04363 isoform cra_c 307 20 4.35E-26 84.80% 4 F:chaperone binding; F:ATPase activator activity; F:chaperone activator activity; C:cytoplasm    
contig04364 g1 to s phase transition 1 632 20 4.00E-95 98.50% 8 F:GTP binding; F:DNA binding; F:protein binding; F:translation release factor activity; C:nucleus; P:translation; P:regulation of transcription, DNA-dependent; F:GTPase activity EC:3.6.5.3; EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.4  
contig04365 ---NA--- 280 0     0      
contig04366 bcl2-associated x a 558 2 2.81E-05 98.50% 5 P:apoptosis; P:positive regulation of apoptosis; P:positive regulation of caspase activity; P:response to cadmium ion; P:response to methylmercury    
contig04367 ---NA--- 260 0     0      
contig04368 ---NA--- 397 0     0      
contig04369 ---NA--- 297 0     0      
contig04370 ---NA--- 262 0     0      
contig04371 ubiquitin-conjugating enzyme e2d 3 (ubc4 5 yeast) isoform cra_a 645 20 7.35E-47 96.15% 5 F:protein binding; P:ubiquitin cycle; P:proteasomal ubiquitin-dependent protein catabolic process; F:ubiquitin-protein ligase activity; P:regulation of protein metabolic process EC:6.3.2.19  
contig04372 unnamed protein product [Tetraodon nigroviridis] 248 1 1.46E-11 72.00% 0      
contig04373 ---NA--- 273 0     0      
contig04374 ---NA--- 277 0     0      
contig04375 smith-magenis syndrome chromosome candidate 7-like 999 20 1.55E-161 80.15% 2 C:membrane attack complex; C:mitochondrion    
contig04376 ---NA--- 202 0     0      
contig04377 ---NA--- 298 0     0      
contig04378 ---NA--- 269 0     0      
contig04379 ubiquitin- containing phd and ring finger 1 264 20 4.01E-11 90.70% 13 P:DNA repair; P:organ regeneration; F:zinc ion binding; P:cell cycle; P:zinc ion transport; P:regulation of transcription, DNA-dependent; F:ligase activity; F:DNA binding; F:protein binding; P:ubiquitin cycle; F:transporter activity; P:cell proliferation; C:nucleus    
contig04380 pax interacting (with transcription-activation domain) protein 1 251 20 3.42E-31 92.15% 1 C:nucleus    
contig04381 ataxin 7-like 2 169 6 4.70E-12 80.50% 3 F:F; P:P; C:C    
contig04382 ---NA--- 278 0     0      
contig04383 uncharacterized protein c7orf57 homolog 245 2 7.94E-28 70.00% 0      
contig04384 ---NA--- 111 0     0      
contig04385 ---NA--- 316 0     0      
contig04386 adaptor-related protein complex sigma 2 subunit 284 20 1.21E-28 96.35% 7 P:protein complex assembly; C:cytoplasmic vesicle membrane; F:protein binding; P:vesicle-mediated transport; P:intracellular protein transport; C:clathrin adaptor complex; C:trans-Golgi network    
contig04387 ---NA--- 250 0     0      
contig04388 sh3 domain ysc-like 1 916 20 3.01E-20 78.75% 2 F:F; C:C    
contig04389 ---NA--- 333 0     0      
contig04390 ---NA--- 251 0     0      
contig04391 unnamed protein product [Tetraodon nigroviridis] 255 1 2.72E-07 69.00% 0      
contig04392 ---NA--- 647 0     0      
contig04393 ---NA--- 464 0     0      
contig04394 ---NA--- 259 0     0      
contig04395 ---NA--- 515 0     0      
contig04396 dihydrolipoamide dehydrogenase 723 20 3.85E-109 88.05% 18 F:NAD or NADH binding; P:gastrulation; F:lipoamide binding; P:cell redox homeostasis; P:dihydrolipoamide metabolic process; P:sperm capacitation; P:proteolysis; P:acetyl-CoA biosynthetic process from pyruvate; C:pyruvate dehydrogenase complex; P:mitochondrial electron transport, NADH to ubiquinone; C:acrosomal matrix; C:flagellum; C:mitochondrial matrix; F:dihydrolipoyl dehydrogenase activity; P:regulation of membrane potential; F:FAD binding; P:lipoate metabolic process; P:electron transport EC:1.8.1.4  
contig04397 ---NA--- 270 0     0      
contig04398 ---NA--- 257 0     0      
contig04399 yy1 transcription factor 378 20 1.97E-42 79.90% 9 C:PcG protein complex; P:regulation of transcription from RNA polymerase II promoter; F:zinc ion binding; C:transcription factor complex; F:transcription corepressor activity; F:transcription factor activity; P:camera-type eye morphogenesis; F:transcription coactivator activity; P:anterior/posterior pattern formation    
contig04400 dep domain containing 7 602 20 3.08E-13 50.80% 4 ; F:F; P:P; C:C    
100 Rows returned.
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