Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 3901 - 4000:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig03901 homeobox prox 1 286 20 3.53E-31 92.80% 4 C:cytoplasm; F:identical protein binding; C:nucleus; F:DNA binding    
contig03902 ---NA--- 395 0     0      
contig03903 ---NA--- 101 0     0      
contig03904 phosphatidylethanolamine-binding protein variant 1 352 20 4.40E-34 89.20% 2 F:F; P:P    
contig03905 ---NA--- 429 0     0      
contig03906 ---NA--- 398 0     0      
contig03907 ---NA--- 254 0     0      
contig03908 ---NA--- 407 0     0      
contig03909 ---NA--- 251 0     0      
contig03910 glutamate dehydrogenase 413 20 3.94E-27 97.40% 5 F:glutamate dehydrogenase [NAD(P)+] activity; F:GTP binding; P:cellular amino acid metabolic process; C:mitochondrial matrix; F:ATP binding EC:1.4.1.3  
contig03911 profilin 2 474 20 3.79E-62 89.45% 5 C:cytoplasm; P:regulation of actin filament polymerization; F:actin binding; C:actin cytoskeleton; F:phosphatidylinositol-4,5-bisphosphate binding    
contig03912 ---NA--- 262 0     0      
contig03913 ---NA--- 240 0     0      
contig03914 translocase of outer mitochondrial membrane 40 608 20 4.24E-51 86.05% 5 P:anion transport; F:voltage-gated anion channel activity; C:integral to membrane; C:mitochondrial outer membrane; P:protein transport    
contig03915 ---NA--- 266 0     0      
contig03916 ---NA--- 277 0     0      
contig03917 ---NA--- 463 0     0      
contig03918 rna polymerase ii associated protein 2 333 20 7.44E-26 60.85% 4 F:F; C:integral to membrane; C:membrane; P:P    
contig03919 ---NA--- 247 0     0      
contig03920 ---NA--- 260 0     0      
contig03921 g5 247 8 2.10E-04 63.25% 0      
contig03922 ---NA--- 239 0     0      
contig03923 elongation factor tu gtp binding domain containing 2 420 20 1.78E-46 94.30% 7 P:RNA splicing; F:translation elongation factor activity; F:GTP binding; C:spliceosomal complex; F:protein binding; P:mRNA processing; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig03924 ---NA--- 441 0     0      
contig03925 zona pellucida glycoprotein 926 20 4.85E-50 62.10% 1 C:chorion    
contig03926 rna binding motif protein 17 1112 20 3.72E-114 83.65% 5 P:RNA splicing; ; C:spliceosomal complex; P:mRNA processing; F:nucleotide binding    
contig03927 tetratricopeptide repeat domain 27 335 20 3.23E-21 59.65% 1 F:protein binding    
contig03928 programmed cell death 7 405 20 2.26E-06 72.15% 7 P:regulation of transcription, DNA-dependent; P:apoptosis; C:U12-type spliceosomal complex; P:RNA splicing; P:response to glucocorticoid stimulus; C:nucleus; P:induction of apoptosis    
contig03929 damage-specific dna binding protein 127kda 342 20 4.02E-43 97.30% 6 C:cytoplasm; F:protein binding; P:ubiquitin cycle; F:damaged DNA binding; C:nucleus; P:DNA repair    
contig03930 transmembrane protein 18 805 20 2.00E-59 76.15% 1 C:membrane attack complex    
contig03931 ---NA--- 598 0     0      
contig03932 ribonuclease nuclear 383 20 1.82E-72 99.05% 4 C:intracellular; P:RNA processing; F:ribonuclease III activity; F:double-stranded RNA binding EC:3.1.26.3  
contig03933 ---NA--- 330 0     0      
contig03934 bet1 homolog 432 20 2.92E-30 86.10% 3 C:Golgi membrane; F:protein binding; P:ER to Golgi vesicle-mediated transport    
contig03935 ---NA--- 871 0     0      
contig03936 dcun1d1 protein 1303 20 1.33E-68 94.90% 3 F:F; P:P; C:C    
contig03937 chromosome 12 open reading frame 23 365 20 7.65E-31 74.55% 1 C:membrane attack complex    
contig03938 u2 small nuclear rna auxiliary factor 1 710 20 3.95E-87 97.40% 7 C:Cajal body; C:spliceosomal complex; F:RNA binding; F:protein binding; F:zinc ion binding; P:nuclear mRNA splicing, via spliceosome; F:nucleotide binding    
contig03939 ---NA--- 266 0     0      
contig03940 ---NA--- 169 0     0      
contig03941 protein phosphatase regulatory subunit 8 327 20 9.48E-21 87.00% 14 F:RNA binding; F:endonuclease activity; F:ribonuclease E activity; P:RNA catabolic process; P:regulation of transcription, DNA-dependent; F:DNA binding; F:protein binding; F:magnesium ion binding; P:nuclear mRNA splicing, via spliceosome; P:multicellular organismal development; P:cell proliferation; F:protein serine/threonine phosphatase inhibitor activity; F:protein phosphatase type 1 regulator activity; C:nucleus    
contig03942 ---NA--- 246 0     0      
contig03943 pyruvate kinase 254 19 2.82E-12 84.79% 6 F:pyruvate kinase activity; F:protein binding; F:potassium ion binding; F:magnesium ion binding; P:glycolysis; C:mitochondrion EC:2.7.1.40  
contig03944 nuclear transcription x-box binding-like 1 242 20 2.16E-33 82.45% 6 F:protein binding; F:transcription factor activity; C:integral to membrane; C:nucleus; F:zinc ion binding; P:regulation of transcription, DNA-dependent    
contig03945 ---NA--- 437 0     0      
contig03946 ---NA--- 256 0     0      
contig03947 n-glycanase 1 455 20 1.55E-39 68.10% 4 C:cytoplasm; F:protein binding; P:glycoprotein catabolic process; F:hydrolase activity    
contig03948 ---NA--- 323 0     0      
contig03949 proteasome ( macropain) inhibitor subunit 1 255 20 2.37E-27 74.70% 4 C:proteasome core complex; F:protein binding; P:ubiquitin-dependent protein catabolic process; F:proteasome inhibitor activity    
contig03950 origin recognition complex subunit 3-like ( cerevisiae) 672 20 7.16E-88 69.65% 3 P:DNA replication; F:binding; C:nucleus    
contig03951 major facilitator superfamily domain containing 2 248 20 3.57E-12 69.55% 1 C:integral to membrane    
contig03952 rad51 homolog ( coli) ( cerevisiae) 255 20 1.17E-26 100.00% 14 F:damaged DNA binding; F:double-stranded DNA binding; P:DNA repair; P:meiosis; C:condensed nuclear chromosome; P:DNA unwinding involved in replication; F:sequence-specific DNA binding; F:ATP binding; F:recombinase activity; F:protein binding; F:single-stranded DNA binding; F:DNA-dependent ATPase activity; P:response to cadmium ion; P:response to methylmercury    
contig03953 thioredoxin domain containing 5 448 20 1.61E-52 70.65% 2 C:endoplasmic reticulum lumen; P:anti-apoptosis    
contig03954 trna -methyltransferase subunit trm61 942 19 1.51E-14 86.05% 4 F:tRNA (adenine-N1-)-methyltransferase activity; F:protein binding; C:nucleus; P:tRNA processing EC:2.1.1.36  
contig03955 ---NA--- 312 0     0      
contig03956 solute carrier family sodium bicarbonate member 7 403 20 1.12E-29 91.30% 9 C:basolateral plasma membrane; C:apical plasma membrane; F:inorganic anion exchanger activity; P:anion transport; F:sodium ion binding; C:integral to membrane; F:symporter activity; P:sodium ion transport; C:cell projection    
contig03957 cop9 constitutive photomorphogenic homolog subunit 8 867 20 1.65E-33 79.85% 3 C:cytoplasm; F:protein binding; C:signalosome    
contig03958 tnfaip3 interacting protein 1 251 20 7.38E-26 80.55% 7 C:cytoplasm; P:defense response; P:negative regulation of viral genome replication; P:glycoprotein biosynthetic process; F:protein binding; P:pathogenesis; P:translation EC:3.6.5.3  
contig03959 ---NA--- 444 0     0      
contig03960 ---NA--- 533 0     0      
contig03961 nadh dehydrogenase subunit 5 249 20 9.04E-16 86.40% 6 F:NADH dehydrogenase (ubiquinone) activity; P:electron transport; P:transport; C:integral to membrane; P:ATP synthesis coupled electron transport; C:mitochondrial respiratory chain EC:1.6.5.3  
contig03962 ---NA--- 270 0     0      
contig03963 ---NA--- 252 0     0      
contig03964 dnmt1 protein 326 20 3.83E-54 95.30% 10 F:zinc ion binding; P:retina morphogenesis in camera-type eye; P:exocrine pancreas development; P:regulation of transcription, DNA-dependent; P:histone H3-K9 methylation; F:DNA binding; F:transcription factor binding; P:DNA methylation on cytosine; F:DNA (cytosine-5-)-methyltransferase activity; C:nucleus EC:2.1.1.37  
contig03965 ---NA--- 409 0     0      
contig03966 ---NA--- 314 0     0      
contig03967 tetratricopeptide repeat domain 3 663 19 1.47E-13 59.74% 5 F:metal ion binding; F:zinc ion binding; P:P; F:protein binding; C:C    
contig03968 nuclear receptor coactivator 5 502 4 3.88E-12 65.50% 0      
contig03969 zinc finger protein 20 656 3 1.22E-09 67.33% 1 F:binding    
contig03970 elongation factor mitochondrial precursor 266 5 2.20E-17 79.20% 2 C:intracellular; F:translation elongation factor activity    
contig03971 ---NA--- 166 0     0      
contig03972 ---NA--- 242 0     0      
contig03973 ---NA--- 280 0     0      
contig03974 activin a type iib 555 20 2.32E-36 83.55% 15 P:positive regulation of activin receptor signaling pathway; F:activin receptor activity, type II; P:cartilage development; F:manganese ion binding; P:regulation of transcription; C:cell surface; P:hindbrain development; F:ATP binding; F:magnesium ion binding; P:neural crest cell migration; F:growth factor binding; C:cytoplasm; P:anterior/posterior pattern formation; C:integral to plasma membrane; P:protein amino acid phosphorylation    
contig03975 ---NA--- 269 0     0      
contig03976 ---NA--- 302 0     0      
contig03977 gdp dissociation inhibitor 2 682 20 8.69E-105 94.90% 8 C:cell surface; C:Golgi apparatus; F:Rab GTPase activator activity; P:regulation of GTPase activity; F:Rab GDP-dissociation inhibitor activity; C:membrane; P:small GTPase mediated signal transduction; P:protein transport    
contig03978 monocyte to macrophage differentiation-associated 298 20 1.84E-40 92.80% 6 F:receptor activity; C:integral to plasma membrane; C:membrane fraction; P:cytolysis; C:late endosome membrane; C:lysosomal membrane    
contig03979 unnamed protein product [Tetraodon nigroviridis] 473 1 9.52E-05 95.00% 0      
contig03980 ---NA--- 741 0     0      
contig03981 nadh dehydrogenase 1 beta 12kda 449 20 6.14E-36 75.00% 4 P:mitochondrial electron transport, NADH to ubiquinone; F:NADH dehydrogenase (ubiquinone) activity; P:electron transport; C:mitochondrial respiratory chain complex I EC:1.6.5.3  
contig03982 ---NA--- 311 0     0      
contig03983 ---NA--- 295 0     0      
contig03984 thump domain containing 3 201 20 2.85E-25 84.30% 3 F:protein binding; F:RNA binding; F:methyltransferase activity EC:2.1.1.0  
contig03985 ---NA--- 294 0     0      
contig03986 retinoic acid alpha 240 20 4.22E-29 98.40% 16 P:regulation of anti-apoptosis; F:retinoic acid receptor activity; F:zinc ion binding; P:zinc ion transport; P:positive regulation of transcription from RNA polymerase II promoter; P:ventricular cardiac muscle cell differentiation; P:ureteric bud development; F:transcription repressor activity; P:negative regulation of transcription from RNA polymerase II promoter; F:sequence-specific DNA binding; F:protein binding; F:transcription factor activity; P:transcription antitermination; F:steroid hormone receptor activity; C:perinuclear region of cytoplasm; C:nucleus    
contig03987 ---NA--- 141 0     0      
contig03988 ---NA--- 157 0     0      
contig03989 ---NA--- 350 0     0      
contig03990 hexosaminidase a 577 20 4.56E-57 86.90% 4 P:carbohydrate metabolic process; C:lysosome; F:beta-N-acetylhexosaminidase activity; F:cation binding EC:3.2.1.52  
contig03991 ww domain containing e3 ubiquitin protein ligase 2 298 20 2.34E-19 100.00% 5 F:protein binding; P:ubiquitin cycle; F:ubiquitin-protein ligase activity; P:entry of virus into host cell; C:ubiquitin ligase complex EC:6.3.2.19  
contig03992 ---NA--- 276 0     0      
contig03993 methyltransferase like 3 585 20 1.27E-78 99.95% 6 F:RNA binding; P:RNA methylation; C:nuclear speck; F:mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; F:mRNA (N6-adenosine)-methyltransferase activity; P:mRNA modification EC:2.1.1.62  
contig03994 glutaminyl-trna synthetase 346 20 2.98E-30 85.30% 9 F:glutamine-tRNA ligase activity; F:RNA binding; C:aminoacyl-tRNA synthetase multienzyme complex; P:glutamyl-tRNA aminoacylation; P:anti-apoptosis; F:ATP binding; F:protein kinase binding; C:cytoplasm; P:glutaminyl-tRNA aminoacylation EC:6.1.1.18  
contig03995 ---NA--- 372 0     0      
contig03996 smc4 protein 433 20 4.96E-46 93.65% 8 C:cytoplasm; P:DNA metabolic process; P:mitotic chromosome condensation; F:ATP binding; C:chromosome; C:nucleus; F:protein heterodimerization activity; P:cell division    
contig03997 ubiquitin-conjugating enzyme e2t 800 20 2.67E-48 87.30% 3 F:ubiquitin-protein ligase activity; P:ubiquitin cycle; P:regulation of protein metabolic process EC:6.3.2.19  
contig03998 ---NA--- 262 0     0      
contig03999 ---NA--- 334 0     0      
contig04000 ---NA--- 376 0     0      
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