Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 2801 - 2900:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig02801 poly binding cytoplasmic 1 882 20 3.23E-125 65.35% 7 P:chordate embryonic development; F:protein self-association; F:poly(A) RNA binding; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; P:mRNA stabilization; C:cytoplasm; F:eukaryotic initiation factor 4G binding    
contig02802 ---NA--- 378 0     0      
contig02803 ---NA--- 516 0     0      
contig02804 ---NA--- 1154 0     0      
contig02805 ---NA--- 346 0     0      
contig02806 family with sequence similarity member a 838 20 1.94E-84 78.60% 3 F:F; P:P; C:C    
contig02807 solute carrier family member 3 692 7 3.50E-08 82.43% 2 P:sodium ion transport; C:membrane    
contig02808 kinesin family member 11 354 20 2.12E-12 79.15% 12 C:cytoplasm; P:mitotic spindle organization; P:microtubule-based movement; P:spindle pole body organization; P:mitosis; F:ATP binding; C:spindle pole; C:spindle microtubule; C:kinesin complex; P:mitotic centrosome separation; P:cell division; F:microtubule motor activity    
contig02809 immature colon carcinoma transcript 1 278 20 2.39E-16 74.70% 5 F:translation release factor activity; F:F; P:P; P:translational termination; C:C    
contig02810 ndrg family member 3 1464 20 4.72E-166 88.00% 5 F:phosphopantetheine binding; P:negative regulation of cell growth; C:cytoplasm; P:cell differentiation; P:spermatogenesis    
contig02811 ---NA--- 164 0     0      
contig02812 unnamed protein product [Tetraodon nigroviridis] 247 1 2.93E-06 65.00% 0      
contig02813 g protein pathway suppressor 1 1724 20 0 95.30% 7 C:cytoplasm; F:protein binding; P:JNK cascade; P:inactivation of MAPK activity; P:cell cycle; F:GTPase inhibitor activity; C:signalosome    
contig02814 nuclear factor of activated t- calcineurin-dependent 2 interacting protein 510 20 8.42E-18 62.35% 4 F:protein binding; P:cytokine production; P:regulation of transcription, DNA-dependent; C:intracellular part    
contig02815 unnamed protein product [Tetraodon nigroviridis] 253 1 1.22E-07 82.00% 0      
contig02816 ---NA--- 246 0     0      
contig02817 ---NA--- 395 0     0      
contig02818 ---NA--- 284 0     0      
contig02819 ---NA--- 382 0     0      
contig02820 ---NA--- 277 0     0      
contig02821 ---NA--- 370 0     0      
contig02822 ---NA--- 437 0     0      
contig02823 lyrm7 homolog 684 20 1.48E-19 76.15% 2 F:F; C:C    
contig02824 ---NA--- 422 0     0      
contig02825 nuclear cap binding protein subunit 80kda 393 20 4.19E-16 88.70% 6 F:RNA binding; F:protein binding; P:positive regulation of mRNA 3'-end processing; P:mRNA transport; C:nucleus; P:mRNA cleavage    
contig02826 ---NA--- 252 0     0      
contig02827 ---NA--- 521 0     0      
contig02828 ---NA--- 501 0     0      
contig02829 ---NA--- 690 0     0      
contig02830 ---NA--- 324 0     0      
contig02831 mitochondrial ribosomal protein s16 856 20 3.59E-65 83.20% 3 C:mitochondrial small ribosomal subunit; F:structural constituent of ribosome; P:translation EC:3.6.5.3  
contig02832 eukaryotic translation initiation factor 3 subunit k 292 20 1.48E-13 96.30% 7 C:eukaryotic translation initiation factor 3 complex; F:RNA binding; F:protein binding; P:regulation of translational initiation; F:translation initiation factor activity; C:nucleus; F:ribosome binding    
contig02833 ---NA--- 319 0     0      
contig02834 ---NA--- 353 0     0      
contig02835 translocator protein 373 20 3.89E-22 89.90% 2 F:receptor activity; C:integral to membrane    
contig02836 ---NA--- 891 0     0      
contig02837 cg3552- isoform a 348 20 5.40E-32 69.45% 3 F:F; F:phosphopantetheine binding; C:C    
contig02838 ---NA--- 445 0     0      
contig02839 ---NA--- 630 0     0      
contig02840 ---NA--- 271 0     0      
contig02841 ---NA--- 216 0     0      
contig02842 phosphoribosylformylglycinamidine synthase 418 20 2.15E-12 63.05% 10 P:'de novo' IMP biosynthetic process; F:ligase activity; F:phosphoribosylformylglycinamidine synthase activity; F:nucleotide binding; C:cytoplasm; F:ATP binding; F:catalytic activity; P:glutamine metabolic process; F:protein binding; P:purine nucleotide biosynthetic process    
contig02843 muts homolog 6 631 20 8.06E-96 85.20% 24 F:oxidized purine DNA binding; P:negative regulation of DNA recombination; F:dinucleotide insertion or deletion binding; F:MutLalpha complex binding; F:purine-specific mismatch base pair DNA N-glycosylase activity; F:four-way junction DNA binding; F:ADP binding; P:DNA damage response, signal transduction resulting in induction of apoptosis; F:single guanine insertion binding; P:response to UV; P:determination of adult lifespan; F:single thymine insertion binding; P:somatic hypermutation of immunoglobulin genes; P:base-excision repair; F:magnesium ion binding; C:nuclear chromatin; F:ATPase activity; F:protein homodimerization activity; F:chromatin binding; F:guanine/thymine mispair binding; P:mismatch repair; F:ATP binding; C:MutSalpha complex; P:isotype switching    
contig02844 ---NA--- 329 0     0      
contig02845 coiled-coil domain containing 130 752 20 3.72E-110 88.35% 2 F:protein binding; P:response to virus    
contig02846 ---NA--- 522 0     0      
contig02847 2 -phosphodiesterase 275 20 4.83E-25 73.60% 2 F:F; C:C    
contig02848 ---NA--- 264 0     0      
contig02849 ---NA--- 243 0     0      
contig02850 unnamed protein product [Tetraodon nigroviridis] 479 1 2.10E-04 65.00% 0      
contig02851 ring finger protein 25 468 15 4.00E-19 65.53% 3 F:protein binding; F:metal ion binding; P:zinc ion transport    
contig02852 ---NA--- 254 0     0      
contig02853 ---NA--- 324 0     0      
contig02854 mediator of rna polymerase ii subunit 8 homolog 801 20 1.89E-110 84.85% 4 ; P:transcription antitermination; P:ubiquitin cycle; P:regulation of transcription, DNA-dependent    
contig02855 transmembrane and coiled-coil domains 6 666 20 4.59E-47 61.90% 5 F:binding; C:integral to membrane; C:membrane; P:P; C:C    
contig02856 hydroxyacyl-coenzyme a dehydrogenase 3-ketoacyl-coenzyme a thiolase enoyl-coenzyme a hydratase (trifunctional protein) alpha subunit 403 20 4.10E-48 94.75% 11 F:NAD or NADH binding; F:long-chain-enoyl-CoA hydratase activity; F:acetyl-CoA C-acyltransferase activity; C:mitochondrial inner membrane; C:fatty acid beta-oxidation multienzyme complex; P:response to bacterium; F:3-hydroxyacyl-CoA dehydrogenase activity; P:fatty acid beta-oxidation; P:response to drug; F:long-chain-3-hydroxyacyl-CoA dehydrogenase activity; F:enoyl-CoA hydratase activity EC:4.2.1.74; EC:2.3.1.16; EC:1.1.1.35; EC:1.1.1.211; EC:4.2.1.17  
contig02857 isoform cra_b 878 20 7.53E-42 57.50% 6 F:nucleic acid binding; F:metal ion binding; F:zinc ion binding; P:P; C:nucleus; C:intracellular    
contig02858 malignant t cell amplified sequence 1 930 20 6.75E-100 96.75% 2 P:positive regulation of cell proliferation; F:RNA binding    
contig02859 src homology 2 domain-containing transforming protein partial 259 3 2.29E-14 86.00% 0      
contig02860 inhibitor of growth member 2 1589 20 7.18E-115 76.45% 12 P:chromatin modification; F:zinc ion binding; P:regulation of transcription, DNA-dependent; P:regulation of cell growth; F:DNA binding; C:CCAAT-binding factor complex; F:transcription activator activity; F:protein binding; P:signal transduction; C:chromosome; F:chromatin binding; P:positive regulation of transcription    
contig02861 eh-domain containing 1 427 20 5.99E-60 90.70% 10 F:GTP binding; C:plasma membrane; C:endocytic vesicle; F:protein binding; C:early endosome membrane; F:calcium ion binding; F:ATP binding; P:endosome transport; P:endocytosis; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig02862 ankyrin repeat domain 43 530 20 1.29E-59 72.05% 0      
contig02863 fukutin 266 20 1.69E-09 88.90% 6 C:Golgi membrane; C:extracellular space; P:muscle organ development; P:nervous system development; F:transferase activity; C:integral to membrane    
contig02864 di-n-acetyl- 660 20 1.59E-68 82.10% 5 F:chitinase activity; C:extracellular space; P:chitin catabolic process; F:cation binding; C:lysosome EC:3.2.1.14  
contig02865 ---NA--- 175 0     0      
contig02866 nipsnap homolog 3a 268 20 3.49E-23 73.25% 3 C:cytoplasm; P:P; C:C    
contig02867 tripartite motif-containing 32 387 1 1.04E-19 77.00% 3 P:intracellular transport; P:pigment granule aggregation in cell center; F:binding    
contig02868 ---NA--- 250 0     0      
contig02869 ---NA--- 366 0     0      
contig02870 subfamily member 28 335 20 2.90E-46 73.45% 1 F:protein binding    
contig02871 histone deacetylase 2 1291 20 1.92E-27 89.45% 17 P:neuron migration; P:Wnt receptor signaling pathway; F:histone deacetylase activity; P:regulation of transcription, DNA-dependent; P:histone deacetylation; P:positive regulation of neurogenesis; C:histone deacetylase complex; P:oligodendrocyte differentiation; F:enzyme binding; P:negative regulation of cell proliferation; F:transcription factor activity; C:heterochromatin; C:replication fork; P:facial nucleus development; F:transcription factor binding; C:cytoplasm; P:convergent extension involved in axis elongation    
contig02872 class member 1 254 20 9.04E-19 83.15% 8 C:soluble fraction; F:alpha-mannosidase activity; C:lysosome; P:mannose metabolic process; P:learning or memory; P:protein deglycosylation; F:zinc ion binding; F:mannose binding EC:3.2.1.24  
contig02873 protein kinase c binding protein 1 320 20 2.61E-18 81.60% 2 F:zinc ion binding; F:protein binding    
contig02874 ---NA--- 175 0     0      
contig02875 ---NA--- 106 0     0      
contig02876 gtp-binding protein sar1a 325 20 1.85E-24 98.00% 7 C:endoplasmic reticulum membrane; F:GTP binding; C:Golgi apparatus; P:vesicle-mediated transport; F:magnesium ion binding; P:intracellular protein transport; P:small GTPase mediated signal transduction    
contig02877 ---NA--- 278 0     0      
contig02878 canopy 4 homolog 613 20 9.15E-78 87.85% 4 P:negative regulation of signal transduction; C:extracellular region; P:regulation of protein localization; F:receptor binding    
contig02879 ---NA--- 187 0     0      
contig02880 eukaryotic translation initiation factor 4b 1214 20 2.31E-19 72.05% 2 F:nucleic acid binding; F:nucleotide binding    
contig02881 minichromosome maintenance complex component 5 441 20 2.05E-55 88.20% 12 P:mitotic cell cycle; P:regulation of DNA replication initiation; P:regulation of transcription, DNA-dependent; P:DNA unwinding involved in replication; C:MCM complex; F:DNA binding; F:ATP binding; C:chromatin; F:protein binding; F:DNA-dependent ATPase activity; P:negative regulation of apoptosis; F:chromatin binding    
contig02882 ---NA--- 351 0     0      
contig02883 shwachman-bodian-diamond syndrome 521 20 1.25E-35 93.55% 1 P:inner cell mass cell proliferation    
contig02884 ---NA--- 706 0     0      
contig02885 cathepsin d 480 20 1.65E-17 93.25% 7 C:lysosome; C:signal recognition particle, endoplasmic reticulum targeting; P:proteolysis; F:pepsin A activity; F:endopeptidase inhibitor activity; P:negative regulation of signal transduction; F:cathepsin D activity EC:3.6.5.4; EC:3.4.23.1; EC:3.4.23.5  
contig02886 rcd1 required for cell differentiation1 homolog 567 20 8.56E-21 95.65% 3 P:cytokine-mediated signaling pathway; P:sex differentiation; F:binding    
contig02887 myb binding protein 1a 535 5 1.07E-16 60.60% 1 P:primary metabolic process    
contig02888 integrator complex subunit 7 600 20 1.12E-72 91.30% 4 F:protein binding; P:protein targeting; P:snRNA processing; C:integrator complex    
contig02889 ---NA--- 551 0     0      
contig02890 ---NA--- 337 0     0      
contig02891 dna-directed dna polymerase epsilon 2 564 20 2.56E-94 95.40% 5 F:DNA-directed DNA polymerase activity; P:DNA replication; F:DNA binding; C:nucleus; P:DNA repair EC:2.7.7.7  
contig02892 bola-like 1 ( coli) isoform cra_a 1044 20 1.26E-68 77.95% 1 F:protein binding    
contig02893 mitochondrial ribosomal protein s2 1059 20 4.82E-116 83.80% 4 F:structural constituent of ribosome; C:small ribosomal subunit; P:translation; C:mitochondrion EC:3.6.5.3  
contig02894 transcription elongation factor b polypeptide 3 binding protein 1 814 20 1.32E-74 79.30% 5 C:chromatin; F:exonuclease activity; F:DNA binding; C:nucleus; P:regulation of transcription, DNA-dependent    
contig02895 ---NA--- 252 0     0      
contig02896 ---NA--- 1048 0     0      
contig02897 ---NA--- 346 0     0      
contig02898 pseudouridylate synthase 1 900 20 2.84E-124 76.60% 8 ; F:pseudouridylate synthase activity; C:nucleolus; P:positive regulation of transcription from RNA polymerase II promoter; F:ligand-dependent nuclear receptor transcription coactivator activity; C:transcription factor complex; P:tRNA pseudouridine synthesis; F:DNA binding EC:4.2.1.70  
contig02899 ---NA--- 278 0     0      
contig02900 ---NA--- 298 0     0      
100 Rows returned.
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