Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 2701 - 2800:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig02701 sco1 protein mitochondrial precursor 498 1 2.38E-06 68.00% 0      
contig02702 ash2 ( or homeotic)-like 249 20 3.90E-43 100.00% 8 P:hemopoiesis; C:histone methyltransferase complex; F:transcription regulator activity; F:DNA binding; F:protein binding; F:zinc ion binding; P:transcription from RNA polymerase II promoter; P:regulation of transcription, DNA-dependent    
contig02703 kinesin family member 2c 1070 20 3.75E-108 84.70% 11 C:cytoplasm; P:establishment or maintenance of microtubule cytoskeleton polarity; P:microtubule-based movement; C:microtubule associated complex; P:meiosis; F:protein binding; F:ATP binding; C:chromosome, centromeric region; C:nucleus; F:microtubule motor activity; C:microtubule    
contig02704 ---NA--- 385 0     0      
contig02705 ring finger 2 268 20 1.73E-14 84.90% 4 F:zinc ion binding; F:nucleic acid binding; C:intracellular; F:protein binding    
contig02706 solute carrier family member 11 347 20 2.68E-47 83.55% 4 C:membrane attack complex; P:amino acid transport; P:sodium ion transport; F:amine transmembrane transporter activity    
contig02707 hiv-1 rev binding protein isoform 3 428 20 1.07E-64 96.75% 3 P:regulation of ARF GTPase activity; F:ARF GTPase activator activity; F:zinc ion binding    
contig02708 adenylosuccinate synthase 726 20 2.55E-60 85.55% 5 C:cytoplasm; F:adenylosuccinate synthase activity; P:purine nucleotide biosynthetic process; F:GTP binding; F:magnesium ion binding EC:6.3.4.4  
contig02709 ras homolog gene member a 563 20 4.50E-51 98.70% 39 C:cytoskeleton; F:signal transducer activity; F:GTP binding; P:negative regulation of neuron differentiation; P:positive regulation of actin filament polymerization; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; P:negative regulation of calcium ion transport via voltage-gated calcium channel activity; P:cell-matrix adhesion; P:positive regulation of translation; P:regulation of dendrite development; C:soluble fraction; P:response to mechanical stimulus; P:stress fiber assembly; P:positive regulation of NF-kappaB import into nucleus; P:stress-activated protein kinase signaling pathway; C:cytosol; C:membrane attack complex; P:positive regulation of cell adhesion; P:negative regulation of neuron apoptosis; F:magnesium ion binding; P:positive regulation of neuron apoptosis; P:response to ethanol; P:skeletal muscle tissue development; P:negative regulation of I-kappaB kinase/NF-kappaB cascade; P:response to hypoxia; P:positive regulation of caspase activity; P:response to amino acid stimulus; C:plasma membrane; P:positive regulation of cell growth; F:protein binding; P:positive regulation of cell migration; P:integrin-mediated signaling pathway; F:GTPase activity; P:positive regulation of smooth muscle contraction; P:response to drug; P:Rho protein signal transduction; C:nucleus; P:positive regulation of vasoconstriction; C:membrane fraction EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig02710 mitochondrial ribosomal protein l36 543 20 1.64E-23 65.10% 2 C:ribosome; C:mitochondrion    
contig02711 novel protein containing an inosine-uridine preferring nucleoside hydrolase domain 947 20 2.06E-112 72.85% 2 F:hydrolase activity; P:P    
contig02712 ---NA--- 351 0     0      
contig02713 fbxo18 protein 801 20 3.29E-38 65.00% 2 F:binding; F:catalytic activity    
contig02714 ---NA--- 252 0     0      
contig02715 coiled-coil domain containing 99 553 20 6.38E-47 77.90% 2 P:P; C:C    
contig02716 polymerase iii (dna directed) polypeptide 39 kda 260 20 1.75E-22 94.30% 6 C:DNA-directed RNA polymerase III complex; F:DNA-directed RNA polymerase activity; F:DNA binding; F:protein binding; P:retina development in camera-type eye; P:regulation of transcription from RNA polymerase III promoter EC:2.7.7.6  
contig02717 transmembrane protein 85 799 20 9.08E-81 91.95% 1 C:integral to membrane    
contig02718 ---NA--- 331 0     0      
contig02719 activator of basal transcription 1 263 20 3.28E-29 77.65% 4 F:general RNA polymerase II transcription factor activity; F:nucleic acid binding; C:transcription factor complex; P:transcription from RNA polymerase II promoter    
contig02720 ---NA--- 241 0     0      
contig02721 ---NA--- 265 0     0      
contig02722 active bcr-related gene 451 20 4.68E-36 55.00% 6 ; P:brain development; F:Rho guanyl-nucleotide exchange factor activity; P:regulation of Rho protein signal transduction; F:guanyl-nucleotide exchange factor activity; C:intracellular    
contig02723 ---NA--- 335 0     0      
contig02724 mediator complex subunit 13 587 20 8.77E-55 94.40% 10 P:transcription initiation from RNA polymerase II promoter; P:positive regulation of transcription from RNA polymerase II promoter; F:ligand-dependent nuclear receptor transcription coactivator activity; F:receptor activity; F:RNA polymerase II transcription mediator activity; P:transcription antitermination; F:thyroid hormone receptor binding; ; P:androgen receptor signaling pathway; F:vitamin D receptor binding    
contig02725 ---NA--- 254 0     0      
contig02726 gamma-aminobutyric acid receptor-associated 1 612 20 3.54E-21 92.95% 5 F:receptor activity; P:autophagy; F:protein binding; C:autophagic vacuole; P:dauer larval development    
contig02727 ---NA--- 245 0     0      
contig02728 sp1 transcription factor 263 20 3.07E-27 65.50% 11 P:positive regulation of transcription from RNA polymerase II promoter, global; F:double-stranded DNA binding; F:protein C-terminus binding; P:organ morphogenesis; F:sequence-specific DNA binding; P:myeloid cell differentiation; F:transcription activator activity; F:transcription factor activity; F:protein homodimerization activity; P:in utero embryonic development; C:nucleus    
contig02729 nadh dehydrogenase 1 beta subcomplex subunit mitochondrial precursor 553 20 5.39E-54 76.25% 4 C:integral to membrane; C:mitochondrial respiratory chain; P:transport; P:electron transport    
contig02730 succinate dehydrogenase iron-sulfur mitochondrial precursor 412 20 7.82E-76 97.00% 6 P:cellular iron ion homeostasis; F:oxidoreductase activity; F:iron ion binding; P:tricarboxylic acid cycle; F:2 iron, 2 sulfur cluster binding; P:iron ion transport    
contig02731 ---NA--- 103 0     0      
contig02732 ---NA--- 160 0     0      
contig02733 ---NA--- 458 0     0      
contig02734 ---NA--- 557 0     0      
contig02735 ---NA--- 493 0     0      
contig02736 lamin b1 622 20 7.34E-54 84.70% 3 C:lamin filament; C:nuclear matrix; F:structural molecule activity    
contig02737 ---NA--- 263 0     0      
contig02738 upstream stimulatory factor 2 605 20 1.03E-49 64.65% 10 P:lactation; F:sequence-specific DNA binding; F:RNA polymerase II transcription factor activity; P:positive regulation of transcription from RNA polymerase II promoter; F:transcription activator activity; F:transcription factor activity; C:nucleus; F:protein heterodimerization activity; F:double-stranded DNA binding; F:protein homodimerization activity    
contig02739 novel protein (zgc:55794) 291 20 1.52E-34 86.85% 1 C:cytoplasm    
contig02740 ---NA--- 298 0     0      
contig02741 ---NA--- 610 0     0      
contig02742 ---NA--- 245 0     0      
contig02743 ---NA--- 187 0     0      
contig02744 ---NA--- 269 0     0      
contig02745 ---NA--- 254 0     0      
contig02746 ---NA--- 463 0     0      
contig02747 zona pellucida glycoprotein 4 850 20 1.51E-27 52.70% 9 C:integral to membrane; C:membrane; F:F; C:proteinaceous extracellular matrix; C:extracellular region; F:receptor activity; F:acrosin binding; C:plasma membrane; P:single fertilization    
contig02748 ligand of numb-protein x 1 327 20 8.60E-29 85.75% 7 C:cytoplasm; F:ligase activity; P:zinc ion transport; P:protein homooligomerization; P:protein ubiquitination during ubiquitin-dependent protein catabolic process; F:zinc ion binding; F:PDZ domain binding    
contig02749 peroxisome biogenesis factor 10 278 20 4.65E-28 90.95% 5 F:metal ion binding; C:peroxisomal membrane; F:protein binding; P:zinc ion transport; P:peroxisome organization    
contig02750 dihydrolipoamide s-succinyltransferase (e2 component of 2-oxo-glutarate complex) 254 20 6.66E-38 92.50% 6 C:oxoglutarate dehydrogenase complex; F:dihydrolipoyllysine-residue succinyltransferase activity; F:protein binding; P:tricarboxylic acid cycle; F:lipoic acid binding; C:mitochondrion EC:2.3.1.61  
contig02751 ---NA--- 607 0     0      
contig02752 ---NA--- 271 0     0      
contig02753 programmed cell death 10 504 20 1.98E-24 100.00% 2 F:protein binding; P:apoptosis    
contig02754 ---NA--- 255 0     0      
contig02755 clathrin light polypeptide 472 20 1.26E-65 84.75% 9 P:vesicle-mediated transport; F:protein transporter activity; C:clathrin coat of coated pit; F:calcium ion binding; C:clathrin coat of trans-Golgi network vesicle; P:protein complex assembly; F:protein binding; P:intracellular protein transport; F:structural molecule activity    
contig02756 ---NA--- 390 0     0      
contig02757 ---NA--- 246 0     0      
contig02758 cleavage stimulation 3 pre-rna subunit tau 780 20 2.58E-32 78.30% 5 F:RNA binding; C:intracellular; P:mRNA polyadenylation; F:nucleotide binding; F:protein binding    
contig02759 nucleolar complex associated 2 homolog 1189 20 1.20E-89 86.90% 6 F:p53 binding; P:negative regulation of histone acetylation; F:transcription repressor activity; F:nucleosomal histone binding; P:negative regulation of transcription from RNA polymerase II promoter; C:nucleus    
contig02760 ---NA--- 359 0     0      
contig02761 ---NA--- 429 0     0      
contig02762 acyl-coenzyme a dehydrogenase member 11 380 20 2.24E-54 84.95% 6 C:peroxisome; F:ATP binding; F:protein tyrosine kinase activity; F:acyl-CoA dehydrogenase activity; P:metabolic process; F:FAD binding EC:2.7.10.0; EC:1.3.99.3  
contig02763 ras-gtpase-activating protein sh3-domain-binding protein 703 20 7.88E-56 71.00% 4 F:nucleic acid binding; C:intracellular; F:hydrolase activity; F:nucleotide binding    
contig02764 ---NA--- 409 0     0      
contig02765 ubiquitin-binding protein homolog 476 20 4.48E-55 94.50% 1 P:protein modification process    
contig02766 ---NA--- 232 0     0      
contig02767 thioredoxin-like protein 4a 822 20 1.06E-79 98.35% 6 C:U5 snRNP; ; P:mitosis; F:transferase activity; P:spliceosome assembly; P:cell division    
contig02768 heat shock transcription factor 1 349 20 3.62E-28 57.70% 3 P:lens development in camera-type eye; F:sequence-specific DNA binding; P:response to heat    
contig02769 tdrd1_oryla ame: full=tudor domain-containing protein 1 312 4 4.81E-13 69.50% 1 F:binding    
contig02770 ---NA--- 264 0     0      
contig02771 ---NA--- 286 0     0      
contig02772 mitochondrial ribosomal protein l13 919 20 7.07E-94 92.15% 3 C:mitochondrial large ribosomal subunit; F:structural constituent of ribosome; P:translation EC:3.6.5.3  
contig02773 ---NA--- 351 0     0      
contig02774 ---NA--- 361 0     0      
contig02775 tousled-like kinase 1 322 20 1.57E-31 77.25% 3 P:protein amino acid phosphorylation; F:ATP binding; F:protein serine/threonine kinase activity EC:2.7.11.0  
contig02776 ---NA--- 239 0     0      
contig02777 ---NA--- 320 0     0      
contig02778 caprin family member 2 1021 20 3.51E-44 49.35% 3 P:negative regulation of cell growth; C:mitochondrion; C:cytoplasm    
contig02779 mediator complex subunit 6 634 20 3.32E-89 94.05% 6 P:positive regulation of transcription from RNA polymerase II promoter; F:receptor activity; P:transcription antitermination; ; F:transcription coactivator activity; F:RNA polymerase II transcription factor activity    
contig02780 echinoderm microtubule associated protein like 1 280 20 6.04E-36 89.75% 2 P:regulation of transcription, DNA-dependent; C:microtubule    
contig02781 ---NA--- 274 0     0      
contig02782 annexin a5 275 20 2.25E-14 84.50% 8 C:cytoplasm; F:calcium channel activity; P:negative regulation of coagulation; P:calcium ion transport; F:protein binding; F:calcium ion binding; F:calcium channel inhibitor activity; F:calcium-dependent phospholipid binding    
contig02783 ---NA--- 436 0     0      
contig02784 ets variant gene 5 (ets-related molecule) 429 20 2.47E-45 86.85% 4 F:sequence-specific DNA binding; F:transcription factor activity; C:nucleus; P:regulation of transcription, DNA-dependent    
contig02785 ---NA--- 273 0     0      
contig02786 ---NA--- 345 0     0      
contig02787 a kinase anchor protein 1 499 20 2.39E-65 80.70% 5 C:extracellular space; F:kinase activity; F:RNA binding; C:integral to membrane; C:mitochondrial outer membrane    
contig02788 methylcrotonoyl-coenzyme a carboxylase 2 688 20 2.40E-118 88.70% 3 F:methylcrotonoyl-CoA carboxylase activity; C:mitochondrial matrix; P:leucine catabolic process EC:6.4.1.4  
contig02789 non-smc element 1 homolog 407 20 4.37E-42 78.15% 8 P:DNA metabolic process; ; F:electron carrier activity; P:zinc ion transport; F:heme binding; P:response to DNA damage stimulus; C:nucleus; F:zinc ion binding    
contig02790 hiv tat specific factor 1 822 20 1.70E-69 83.10% 8 P:viral genome replication; P:regulation of transcription from RNA polymerase II promoter; F:transcription elongation regulator activity; F:RNA polymerase II transcription factor activity; F:RNA binding; F:protein binding; C:nucleus; F:nucleotide binding    
contig02791 ---NA--- 301 0     0      
contig02792 protein disulfide isomerase family member 4 720 20 3.87E-61 73.85% 4 C:endoplasmic reticulum lumen; F:protein binding; F:isomerase activity; P:protein secretion    
contig02793 ---NA--- 256 0     0      
contig02794 ---NA--- 114 0     0      
contig02795 unnamed protein product [Tetraodon nigroviridis] 198 1 8.07E-12 78.00% 0      
contig02796 ---NA--- 200 0     0      
contig02797 ---NA--- 311 0     0      
contig02798 phosphatidylinositol transfer membrane-associated 2 384 3 5.34E-24 75.33% 0      
contig02799 ---NA--- 340 0     0      
contig02800 ---NA--- 294 0     0      
100 Rows returned.
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