Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 2001 - 2100:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig02001 homolog colon nonpolyposis type 1 ( coli) 1466 20 0 84.40% 37 F:oxidized purine DNA binding; P:negative regulation of DNA recombination; P:response to X-ray; F:MutLalpha complex binding; F:protein C-terminus binding; F:four-way junction DNA binding; F:hypoxanthine phosphoribosyltransferase activity; P:B cell differentiation; C:MutSbeta complex; F:ADP binding; F:dinucleotide repeat insertion binding; P:negative regulation of cell cycle; F:single-stranded DNA binding; F:single guanine insertion binding; P:oxidative phosphorylation; P:cellular component movement; P:cell cycle arrest; P:negative regulation of neuron apoptosis; F:centromeric DNA binding; P:determination of adult lifespan; F:single thymine insertion binding; P:response to UV-B; P:somatic hypermutation of immunoglobulin genes; P:base-excision repair; F:magnesium ion binding; P:purine nucleotide biosynthetic process; P:postreplication repair; F:ATPase activity; F:protein homodimerization activity; F:guanine/thymine mispair binding; P:intra-S DNA damage checkpoint; P:mismatch repair; F:ATP binding; C:MutSalpha complex; P:in utero embryonic development; P:maintenance of DNA repeat elements; P:isotype switching EC:2.4.2.8  
contig02002 ---NA--- 235 0     0      
contig02003 ---NA--- 277 0     0      
contig02004 unnamed protein product [Tetraodon nigroviridis] 841 2 1.13E-15 93.00% 0      
contig02005 brca1 associated ring domain 1 299 20 1.68E-17 76.75% 18 P:response to DNA damage stimulus; C:BRCA1-BARD1 complex; C:cytoplasm; P:positive regulation of protein catabolic process; F:protein heterodimerization activity; P:cell cycle arrest; F:metal ion binding; F:ubiquitin-protein ligase activity; P:protein ubiquitination; P:regulation of phosphorylation; P:negative regulation of mRNA 3'-end processing; F:RNA binding; F:protein homodimerization activity; F:kinase binding; P:negative regulation of protein export from nucleus; P:negative regulation of apoptosis; P:positive regulation of apoptosis; P:tissue homeostasis EC:6.3.2.19  
contig02006 ---NA--- 374 0     0      
contig02007 ---NA--- 513 0     0      
contig02008 reticulon 3 1607 20 9.90E-96 88.70% 1 C:endoplasmic reticulum    
contig02009 ---NA--- 291 0     0      
contig02010 26s protease regulatory subunit 1115 20 7.91E-112 91.15% 10 P:nematode larval development; F:peptidase activity; C:protein complex; P:protein catabolic process; F:ATP binding; P:reproduction; P:embryonic development ending in birth or egg hatching; F:nucleoside-triphosphatase activity; C:nucleus; C:cytosol EC:3.6.1.15  
contig02011 ---NA--- 387 0     0      
contig02012 adp-ribosylation-like factor 6 interacting protein 4 127 20 2.42E-08 99.20% 2 F:F; C:C    
contig02013 ---NA--- 253 0     0      
contig02014 ubiquitin associated protein 1 708 20 6.14E-64 52.30% 3 C:cytoplasm; P:P; C:C    
contig02015 ---NA--- 286 0     0      
contig02016 synapse associated protein 1 262 20 1.50E-16 82.05% 2 F:F; P:P    
contig02017 cg9186- isoform b 429 20 2.65E-39 61.75% 0      
contig02018 tho complex 1 338 20 6.29E-17 82.80% 10 P:regulation of apoptosis; P:RNA splicing; F:DNA binding; F:RNA binding; F:protein binding; C:nuclear speck; P:mRNA transport; P:mRNA processing; C:nuclear matrix; P:signal transduction    
contig02019 ---NA--- 477 0     0      
contig02020 ---NA--- 370 0     0      
contig02021 ---NA--- 265 0     0      
contig02022 zorba protein 287 5 4.95E-17 83.20% 9 P:oocyte dorsal/ventral axis specification; P:regulation of translation; P:mRNA processing; C:membrane; F:nucleic acid binding; C:cytoplasm; F:zinc ion binding; F:RNA binding; C:centrosome    
contig02023 establishment of cohesion 1 homolog 2 1456 20 2.28E-118 74.95% 5 F:acyltransferase activity; P:zinc ion transport; P:cellular process; C:nucleus; F:zinc ion binding    
contig02024 proteasome subunit beta type-2 838 20 4.60E-102 93.70% 4 C:proteasome core complex; F:threonine-type endopeptidase activity; P:ubiquitin-dependent protein catabolic process; C:nucleus EC:3.4.25.0  
contig02025 nuclear vcp-like 1320 20 6.60E-140 71.00% 2 F:ATP binding; C:nucleus    
contig02026 ---NA--- 344 0     0      
contig02027 ---NA--- 127 0     0      
contig02028 down-regulator of transcription 1 1475 20 2.79E-57 96.95% 4 F:sequence-specific DNA binding; F:transcription corepressor activity; P:negative regulation of transcription from RNA polymerase II promoter; C:nucleus    
contig02029 importin 5 1578 20 0 96.10% 8 F:protein transporter activity; F:Ran GTPase binding; F:GTPase inhibitor activity; C:nuclear pore; F:nuclear localization sequence binding; P:NLS-bearing substrate import into nucleus; C:cytoplasm; P:protein import into nucleus, docking    
contig02030 ---NA--- 446 0     0      
contig02031 adp-ribosylation factor-like 2 409 20 7.98E-20 88.20% 6 P:tubulin complex assembly; C:intracellular; F:protein binding; F:GTPase inhibitor activity; F:GTP binding; P:small GTPase mediated signal transduction    
contig02032 nuclear protein isoform cra_a 448 20 7.75E-39 77.65% 1 F:zinc ion binding    
contig02033 sar1 gene homolog a ( cerevisiae) isoform cra_b 486 20 7.71E-71 94.70% 9 C:endoplasmic reticulum membrane; C:sarcoplasmic reticulum; F:GTP binding; C:Golgi apparatus; F:magnesium ion binding; P:intracellular protein transport; P:ER to Golgi vesicle-mediated transport; P:small GTPase mediated signal transduction; F:GTPase activity EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig02034 pre-mrna splicing factor 241 20 1.00E-38 100.00% 0      
contig02035 nol6 protein 359 20 1.22E-52 75.90% 4 F:RNA binding; C:small nucleolar ribonucleoprotein complex; F:protein binding; C:condensed nuclear chromosome    
contig02036 delta-like 1 homolog 534 20 5.62E-66 67.15% 5 C:integral to membrane; C:extracellular space; P:multicellular organismal development; F:protein binding; C:soluble fraction    
contig02037 ---NA--- 336 0     0      
contig02038 protein kinase c inhibitor aswz variant 5 573 20 5.90E-33 89.90% 5 F:kinase activity; C:cytoplasm; F:hydrolase activity; F:protein homodimerization activity; C:nucleus    
contig02039 ---NA--- 399 0     0      
contig02040 transmembrane protein 11 1120 20 1.30E-98 90.95% 4 P:signal transduction; C:integral to plasma membrane; F:protein binding; F:G-protein coupled receptor activity    
contig02041 ---NA--- 244 0     0      
contig02042 coiled-coil-helix-coiled-coil-helix domain containing 10 718 20 1.80E-26 83.50% 1 C:mitochondrion    
contig02043 transmembrane 6 superfamily member 1 1644 20 1.30E-88 66.35% 3 C:membrane; P:P; C:C    
contig02044 ---NA--- 256 0     0      
contig02045 ---NA--- 490 0     0      
contig02046 ---NA--- 350 0     0      
contig02047 protein c6orf182 homolog isoform 5 446 20 3.63E-20 65.75% 2 F:F; C:C    
contig02048 mitochondrial ribosomal protein l41 632 20 1.54E-38 81.20% 4 C:mitochondrial large ribosomal subunit; P:apoptosis; F:structural constituent of ribosome; P:translation EC:3.6.5.3  
contig02049 c19orf60 homolog 518 3 2.74E-19 89.33% 0      
contig02050 chromosome 1 open reading frame 112 318 20 1.53E-26 75.45% 1 C:C    
contig02051 eukaryotic translation initiation factor subunit m 1306 20 0 95.15% 3 P:translation; F:protein binding; F:translation initiation factor activity EC:3.6.5.3  
contig02052 ---NA--- 467 0     0      
contig02053 solute carrier family member 1 250 6 3.81E-06 69.83% 4 F:choline transmembrane transporter activity; C:integral to membrane; P:choline transport; P:transport    
contig02054 ---NA--- 311 0     0      
contig02055 ---NA--- 303 0     0      
contig02056 ---NA--- 299 0     0      
contig02057 ---NA--- 266 0     0      
contig02058 ---NA--- 1726 0     0      
contig02059 ---NA--- 422 0     0      
contig02060 ---NA--- 841 0     0      
contig02061 ---NA--- 496 0     0      
contig02062 upf0419 protein c12orf48 465 20 8.09E-20 73.70% 1 C:intracellular part    
contig02063 ---NA--- 266 0     0      
contig02064 unnamed protein product [Tetraodon nigroviridis] 160 1 8.37E-09 100.00% 0      
contig02065 ---NA--- 398 0     0      
contig02066 cytosolic iron-sulfur protein assembly 1 homolog ( cerevisiae) 448 6 3.18E-08 85.83% 1 C:nucleus    
contig02067 c3orf60 homolog 220 6 1.18E-18 76.67% 2 F:F; C:nucleus    
contig02068 farnesyl pyrophosphate synthetase 799 20 5.27E-113 83.00% 5 F:geranyltranstransferase activity; C:cytoplasm; P:isoprenoid biosynthetic process; P:cholesterol biosynthetic process; F:dimethylallyltranstransferase activity EC:2.5.1.10; EC:2.5.1.1  
contig02069 ---NA--- 242 0     0      
contig02070 ---NA--- 358 0     0      
contig02071 ---NA--- 254 0     0      
contig02072 solute carrier family 39 (zinc transporter) member 3 414 20 3.55E-20 84.75% 5 C:extracellular space; P:zinc ion transport; C:integral to membrane; F:zinc ion binding; F:zinc ion transmembrane transporter activity    
contig02073 prune homolog 658 20 2.20E-46 57.40% 1 F:hydrolase activity    
contig02074 hcg28707 434 9 3.02E-27 65.56% 0      
contig02075 ---NA--- 252 0     0      
contig02076 ---NA--- 239 0     0      
contig02077 ---NA--- 254 0     0      
contig02078 ndc80 kinetochore complex component 669 20 1.07E-74 61.55% 3 F:protein binding; P:mitosis; C:nucleus    
contig02079 ---NA--- 542 0     0      
contig02080 ---NA--- 235 0     0      
contig02081 cathepsin l 1276 20 5.23E-150 76.45% 3 P:proteolysis; F:endopeptidase inhibitor activity; F:cysteine-type endopeptidase activity EC:3.4.22.0  
contig02082 wd repeat domain 20 isoform 1 386 20 2.61E-71 97.90% 0      
contig02083 peptidyl-prolyl cis-trans isomerase e 622 20 1.12E-94 90.15% 7 P:protein folding; P:RNA splicing; C:spliceosomal complex; F:RNA binding; P:mRNA processing; F:peptidyl-prolyl cis-trans isomerase activity; F:nucleotide binding EC:5.2.1.8  
contig02084 peptidyl-prolyl cis-trans isomerase e 424 20 1.16E-42 94.75% 4 P:protein folding; F:nucleic acid binding; F:peptidyl-prolyl cis-trans isomerase activity; F:nucleotide binding EC:5.2.1.8  
contig02085 bridging integrator 2 259 20 2.36E-19 77.25% 6 C:cytoplasm; P:developmental process; F:protein binding; P:cell cycle; P:regulation of cellular process; P:endocytosis    
contig02086 ---NA--- 495 0     0      
contig02087 nucleolar protein 11 1183 20 1.07E-122 62.85% 1 C:nucleus    
contig02088 loc398822 protein 1784 20 3.38E-116 56.05% 4 C:cytoskeletal part; C:chromosome, centromeric region; P:cell division; C:microtubule cytoskeleton    
contig02089 survival of motor neuron 1147 20 3.13E-47 79.50% 5 C:cytoplasm; F:RNA binding; P:axon extension involved in development; C:nucleus; P:spliceosome assembly    
contig02090 riken cdna 0610007p22 gene 538 20 4.42E-42 66.10% 4 F:F; C:integral to membrane; C:membrane; C:C    
contig02091 high density lipoprotein binding protein 405 20 7.40E-66 54.75% 9 F:lipid transporter activity; P:lipid metabolic process; P:lipid transport; C:nucleus; C:cytoplasm; F:RNA binding; F:protein binding; P:cholesterol metabolic process; P:steroid metabolic process    
contig02092 -like 2 ( coli) 243 20 5.89E-23 94.30% 17 P:chromatin modification; C:cytosol; C:nuclear matrix; F:damaged DNA binding; P:DNA recombination; P:DNA repair; F:ATP-dependent DNA helicase activity; P:protein folding; P:regulation of transcription, DNA-dependent; P:regulation of cell growth; F:identical protein binding; C:NuA4 histone acetyltransferase complex; F:ATP binding; P:transcription antitermination; F:unfolded protein binding; P:negative regulation of transcription; C:membrane    
contig02093 ---NA--- 452 0     0      
contig02094 ---NA--- 143 0     0      
contig02095 ---NA--- 140 0     0      
contig02096 ---NA--- 179 0     0      
contig02097 replication factor c (activator 1) 38kda 255 20 9.89E-42 94.65% 7 F:DNA clamp loader activity; C:DNA replication factor C complex; F:protein binding; F:ATP binding; P:DNA synthesis involved in DNA repair; C:nucleus; P:DNA strand elongation involved in DNA replication    
contig02098 ---NA--- 565 0     0      
contig02099 ac087333_2g-2 and s-phase expressed 1 343 2 3.43E-10 71.50% 2 P:P; C:C    
contig02100 ---NA--- 585 0     0      
100 Rows returned.
Go to records:
1-100, 101-200, 201-300, 301-400, 401-500, 501-600, 601-700, 701-800, 801-900, 901-1000, 1001-1100, 1101-1200, 1201-1300, 1301-1400, 1401-1500, 1501-1600, 1601-1700, 1701-1800, 1801-1900, 1901-2000, 2001-2100, 2101-2200, 2201-2300, 2301-2400, 2401-2500, 2501-2600, 2601-2700, 2701-2800, 2801-2900, 2901-3000, 3001-3100, 3101-3200, 3201-3300, 3301-3400, 3401-3500, 3501-3600, 3601-3700, 3701-3800, 3801-3900, 3901-4000, 4001-4100, 4101-4200, 4201-4300, 4301-4400, 4401-4500, 4501-4600, 4601-4700, 4701-4800, 4801-4900, 4901-5000, 5001-5100, 5101-5200, 5201-5300, 5301-5400, 5401-5500, 5501-5600, 5601-5700, 5701-5800, 5801-5900, 5901-6000, 6001-6100, 6101-6200, 6201-6300, 6301-6400, 6401-6500, 6501-6600, 6601-6700, 6701-6800, 6801-6900, 6901-7000, 7001-7100, 7101-7200, 7201-7300, 7301-7400, 7401-7500, 7501-7600, 7601-7700, 7701-7800, 7801-7900, 7901-8000, 8001-8100, 8101-8200, 8201-8300, 8301-8400, 8401-8500, 8501-8600, 8601-8700, 8701-8800, 8801-8900, 8901-9000, 9001-9100, 9101-9200, 9201-9300, 9301-9400, 9401-9500, 9501-9600, 9601-9700, 9701-9800, 9801-9900, 9901-10000, 10001-10100, 10101-10200, 10201-10300, 10301-10400, 10401-10500, 10501-10600, 10601-10700, 10701-10800, 10801-10900, 10901-11000, 11001-11100, 11101-11200, 11201-11208
Web Access Statistics © 2003-2025 NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team 		Helpdesk