Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 101 - 200:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig00101 ---NA--- 456 0     0      
contig00102 ---NA--- 170 0     0      
contig00103 nadh dehydrogenase 1 beta subcomplex subunit mitochondrial precursor 487 20 1.05E-35 68.10% 1 C:mitochondrial inner membrane    
contig00104 ---NA--- 269 0     0      
contig00105 ribosomal protein s18 549 20 1.33E-68 99.65% 5 P:ribosome biogenesis; F:structural constituent of ribosome; C:cytosolic small ribosomal subunit; P:regulation of translation; F:rRNA binding    
contig00106 ---NA--- 504 0     0      
contig00107 ---NA--- 254 0     0      
contig00108 ---NA--- 387 0     0      
contig00109 proliferation-associated 2g4 2245 20 0 91.65% 11 F:RNA binding; F:methionyl aminopeptidase activity; P:regulation of translation; F:cobalt ion binding; P:rRNA processing; P:proteolysis; F:protein binding; F:transcription factor activity; C:ribonucleoprotein complex; P:negative regulation of transcription, DNA-dependent; C:nucleus EC:3.4.11.18  
contig00110 ae binding protein 2 647 20 1.18E-20 91.85% 5 F:DNA binding; C:intracellular; F:transcription corepressor activity; F:zinc ion binding; P:regulation of transcription, DNA-dependent    
contig00111 small nuclear ribonucleoprotein f 425 20 2.50E-37 99.25% 6 C:small nucleolar ribonucleoprotein complex; C:spliceosomal complex; F:RNA binding; F:protein binding; C:small nuclear ribonucleoprotein complex; P:nuclear mRNA splicing, via spliceosome    
contig00112 surface protein 1837 12 9.82E-26 51.50% 0      
contig00113 partner of nob1 857 20 2.99E-112 91.40% 2 C:nucleolus; F:RNA binding    
contig00114 nadh dehydrogenase 1 beta 7kda 420 20 5.43E-24 82.15% 5 P:mitochondrial electron transport, NADH to ubiquinone; F:NADH dehydrogenase (ubiquinone) activity; P:electron transport; P:transport; C:mitochondrial respiratory chain complex I EC:1.6.5.3  
contig00115 ribulose-5-phosphate-3-epimerase 804 20 1.49E-30 91.00% 3 F:protein binding; P:carbohydrate metabolic process; F:ribulose-phosphate 3-epimerase activity EC:5.1.3.1  
contig00116 hatching enzyme 924 20 2.83E-66 56.60% 1 F:hydrolase activity    
contig00117 PREDICTED: wu:fi04f09 [Danio rerio] 2177 20 0 56.75% 0      
contig00118 ---NA--- 660 0     0      
contig00119 ---NA--- 238 0     0      
contig00120 ---NA--- 577 0     0      
contig00121 ---NA--- 200 0     0      
contig00122 ---NA--- 270 0     0      
contig00123 ---NA--- 218 0     0      
contig00124 mediator complex subunit 29 333 20 7.70E-23 86.75% 4 F:protein binding; P:transcription antitermination; C:nucleus; P:regulation of transcription, DNA-dependent    
contig00125 hexamethylene bis-acetamide inducible 1 863 20 2.81E-33 80.05% 10 P:negative regulation of cyclin-dependent protein kinase activity; F:cyclin-dependent protein kinase inhibitor activity; P:heart development; P:negative regulation of transcription from RNA polymerase II promoter; F:protein binding; P:transcription termination; F:specific transcriptional repressor activity; C:cytoplasm; C:nucleus; F:snRNA binding    
contig00126 karyopherin alpha 2 (rag cohort importin alpha 1) 1085 20 1.09E-179 68.90% 5 C:cytoplasm; C:nuclear pore; P:protein import into nucleus; F:protein binding; F:protein transporter activity    
contig00127 nucleoside diphosphate kinase b 834 20 1.30E-72 88.85% 21 C:lamellipodium; F:protein binding; P:cell adhesion; F:nucleoside diphosphate kinase activity; P:CTP biosynthetic process; P:regulation of epidermis development; P:regulation of transcription, DNA-dependent; P:negative regulation of cell cycle; P:negative regulation of cell proliferation; C:ruffle; P:positive regulation of keratinocyte differentiation; F:transcription factor activity; P:GTP biosynthetic process; F:magnesium ion binding; P:UTP biosynthetic process; P:positive regulation of epithelial cell proliferation; C:plasma membrane; C:nucleus; F:ATP binding; P:negative regulation of apoptosis; C:mitochondrion EC:2.7.4.6  
contig00128 d-dopachrome tautomerase 567 20 1.01E-29 78.35% 3 F:dopachrome isomerase activity; F:protein binding; F:lyase activity EC:5.3.3.12  
contig00129 ---NA--- 157 0     0      
contig00130 baculoviral iap repeat-containing 5b 416 20 2.13E-57 76.90% 25 C:chromosome, centromeric region; C:cytosol; P:positive regulation of mitotic cell cycle; F:microtubule binding; P:cytokinesis; C:protein complex; F:zinc ion binding; P:microtubule cytoskeleton organization; C:midbody; C:spindle microtubule; P:protein complex localization; P:negative regulation of caspase activity; P:anti-apoptosis; C:cytoplasmic microtubule; P:embryonic development; F:caspase inhibitor activity; P:positive regulation of exit from mitosis; C:centriole; C:interphase microtubule organizing center; F:protein heterodimerization activity; P:spindle checkpoint; F:protein homodimerization activity; P:negative regulation of neuron apoptosis; F:cofactor binding; P:establishment of chromosome localization    
contig00131 zygote arrest 1 1252 20 2.74E-140 64.55% 2 C:cytoplasm; P:multicellular organismal development    
contig00132 ribosomal protein l27 531 20 3.57E-65 98.40% 4 C:cytosolic ribosome; P:ribosome biogenesis; F:structural constituent of ribosome; P:translation EC:3.6.5.3  
contig00133 c4orf27 homolog 600 20 2.42E-51 91.85% 1 C:nucleus    
contig00134 sec61 beta subunit 884 20 1.71E-25 84.60% 4 P:intracellular protein transmembrane transport; C:endoplasmic reticulum membrane; F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity; C:integral to membrane    
contig00135 ---NA--- 312 0     0      
contig00136 ---NA--- 288 0     0      
contig00137 n-terminal acetyltransferase complex ard1 subunit homolog a 622 20 1.60E-24 80.60% 4 P:metabolic process; C:cytoplasm; F:peptide alpha-N-acetyltransferase activity; C:nucleus EC:2.3.1.88  
contig00138 cell division cycle 42 (gtp binding 25kda) 623 20 2.35E-68 98.50% 19 C:filopodium; P:nuclear migration; P:positive regulation of phosphoinositide 3-kinase activity; P:cell-cell adhesion; P:actin filament organization; P:negative regulation of protein complex assembly; P:cell division; C:membrane attack complex; F:GTP-dependent protein binding; P:positive regulation of pseudopodium assembly; P:establishment of cell polarity; P:macrophage differentiation; F:GTPase activity; P:endosome transport; C:cytoplasm; P:filopodium assembly; P:Rho protein signal transduction; F:GTP binding; C:plasma membrane EC:3.6.5.1; EC:3.6.5.2; EC:3.6.5.3; EC:3.6.5.4  
contig00139 transmembrane protein 69 558 19 4.93E-26 77.63% 1 C:integral to membrane    
contig00140 ---NA--- 276 0     0      
contig00141 ---NA--- 279 0     0      
contig00142 ribosomal protein s6 823 20 2.86E-125 99.30% 9 P:ribosome biogenesis; F:structural constituent of ribosome; F:RNA binding; F:protein binding; P:glucose homeostasis; C:cytosolic small ribosomal subunit; C:nucleus; P:translation; C:perinuclear region of cytoplasm EC:3.6.5.3  
contig00143 ---NA--- 348 0     0      
contig00144 ---NA--- 551 0     0      
contig00145 rna methyltransferase nol1 526 2 2.76E-06 61.50% 0      
contig00146 nad h quinone 1 916 20 5.91E-117 70.70% 11 C:cytoplasm; F:cytochrome-b5 reductase activity; F:NAD(P)H dehydrogenase (quinone) activity; P:response to toxin; P:xenobiotic metabolic process; P:response to oxidative stress; P:synaptic transmission, cholinergic; P:nitric oxide biosynthetic process; P:electron transport; P:positive regulation of neuron apoptosis; F:coenzyme binding EC:1.6.2.2; EC:1.6.5.2  
contig00147 ---NA--- 156 0     0      
contig00148 small nuclear ribonucleoprotein polypeptide g 495 20 1.40E-35 93.90% 6 C:small nucleolar ribonucleoprotein complex; ; C:spliceosomal complex; F:protein binding; C:small nuclear ribonucleoprotein complex; P:spliceosome assembly    
contig00149 ---NA--- 621 0     0      
contig00150 ---NA--- 544 0     0      
contig00151 5-aminolevulinate synthase 1 1631 20 0 89.55% 5 F:5-aminolevulinate synthase activity; F:pyridoxal phosphate binding; P:heme biosynthetic process; C:mitochondrial matrix; F:transferase activity, transferring nitrogenous groups EC:2.3.1.37  
contig00152 ---NA--- 546 0     0      
contig00153 ---NA--- 260 0     0      
contig00154 cofilin 2 743 20 1.13E-87 91.10% 4 C:cytoskeleton; C:cytoplasm; F:actin binding; C:nuclear matrix    
contig00155 proteasome subunit beta type-4 precursor 862 20 1.19E-124 89.50% 4 C:proteasome core complex; F:threonine-type endopeptidase activity; P:ubiquitin-dependent protein catabolic process; C:nucleus EC:3.4.25.0  
contig00156 cytochrome b-c1 complex subunit 10 602 20 3.41E-21 84.60% 3 F:ubiquinol-cytochrome-c reductase activity; C:integral to membrane; C:mitochondrial respiratory chain EC:1.10.2.2  
contig00157 ribosomal protein s16 504 20 1.46E-43 99.30% 4 F:structural constituent of ribosome; F:protein binding; C:cytosolic small ribosomal subunit; P:translation EC:3.6.5.3  
contig00158 ---NA--- 266 0     0      
contig00159 lsm4 u6 small nuclear rna associated ( cerevisiae) 1009 20 1.20E-44 99.00% 5 C:U6 snRNP; P:RNA splicing; F:RNA binding; F:protein binding; P:mRNA processing    
contig00160 60s ribosome subunit biogenesis protein nip7 homolog 988 20 7.18E-95 96.15% 4 F:RNA binding; P:ribosome assembly; C:nucleus; F:protein binding    
contig00161 ---NA--- 2532 0     0      
contig00162 ---NA--- 411 0     0      
contig00163 doublesex and mab-3 related transcription factor 2 824 20 2.13E-104 70.10% 5 P:determination of left/right symmetry; P:sex differentiation; F:transcription factor activity; C:nucleus; P:regulation of transcription, DNA-dependent    
contig00164 chaperonin containing subunit 2 2170 20 0 93.30% 6 P:protein amino acid phosphorylation; P:protein folding; C:chaperonin-containing T-complex; F:protein kinase activity; F:ATP binding; F:unfolded protein binding    
contig00165 ---NA--- 1231 0     0      
contig00166 oral cancer overexpressed 1 902 20 5.84E-53 76.25% 0      
contig00167 ---NA--- 456 0     0      
contig00168 potassium channel modulatory factor 1 822 20 6.98E-39 78.75% 6 F:nucleic acid binding; C:intracellular; P:protein ubiquitination; F:ubiquitin-protein ligase activity; F:zinc ion binding; F:ion channel activity EC:6.3.2.19  
contig00169 rna binding motif protein 7 478 20 5.68E-26 47.50% 5 F:RNA binding; F:nucleic acid binding; F:nucleotide binding; P:meiosis; C:C    
contig00170 ---NA--- 127 0     0      
contig00171 ubiquitin-like protein fubi 537 20 8.29E-57 89.80% 5 P:protein modification process; F:structural constituent of ribosome; F:protein binding; C:cytosolic small ribosomal subunit; P:translation EC:3.6.5.3  
contig00172 ---NA--- 601 0     0      
contig00173 gem (nuclear organelle) associated protein 4 380 20 6.36E-25 68.75% 5 C:cytoplasm; C:nucleolus; F:protein binding; C:small nuclear ribonucleoprotein complex; P:rRNA processing    
contig00174 defective in cullin neddylation domain containing 5 1042 20 9.74E-122 85.55% 2 F:F; P:P    
contig00175 ---NA--- 456 0     0      
contig00176 solute carrier family 25 (mitochondrial carrier phosphate carrier) member 3 1448 20 1.54E-169 89.20% 5 F:binding; C:mitochondrial inner membrane; F:phosphate:hydrogen symporter activity; P:transport; C:integral to membrane    
contig00177 ---NA--- 221 0     0      
contig00178 ---NA--- 625 0     0      
contig00179 ---NA--- 258 0     0      
contig00180 ---NA--- 141 0     0      
contig00181 ---NA--- 128 0     0      
contig00182 insulin receptor substrate 2 1794 20 8.27E-54 60.80% 11 P:mammary gland development; F:signal transducer activity; F:protein domain specific binding; P:response to peptide hormone stimulus; P:positive regulation of mesenchymal cell proliferation; P:positive regulation of cell migration; F:phosphoinositide 3-kinase binding; F:insulin receptor binding; P:brain development; F:protein kinase binding; P:insulin receptor signaling pathway    
contig00183 ---NA--- 235 0     0      
contig00184 basic transcription factor 3 291 20 1.33E-22 99.90% 6 F:RNA polymerase II transcription factor activity; F:protein binding; C:transcription factor complex; F:transcription factor activity; P:transcription from RNA polymerase II promoter; P:regulation of transcription, DNA-dependent    
contig00185 isoform cra_c 1578 20 2.65E-69 69.05% 5 C:cytoplasm; F:mRNA binding; P:histone mRNA 3'-end processing; C:ribonucleoprotein complex; C:nucleus    
contig00186 cyclin-dependent kinase 9 1485 20 0 94.65% 13 P:transcription initiation from RNA polymerase II promoter; P:regulation of cell cycle; F:RNA polymerase II carboxy-terminal domain kinase activity; P:regulation of transcription, DNA-dependent; C:transcription elongation factor complex; F:DNA binding; F:ATP binding; F:protein binding; P:RNA elongation from RNA polymerase II promoter; F:cyclin-dependent protein kinase activity; P:cell proliferation; F:snRNA binding; P:protein amino acid phosphorylation EC:2.7.11.23; EC:2.7.11.22  
contig00187 ---NA--- 1094 0     0      
contig00188 riken cdna isoform cra_b 729 20 1.93E-23 52.05% 0      
contig00189 eukaryotic translation elongation factor 1 beta 2 708 20 4.08E-92 86.70% 3 F:translation elongation factor activity; C:eukaryotic translation elongation factor 1 complex; P:translational elongation    
contig00190 mitochondrial 28s ribosomal protein s33 303 20 3.35E-18 90.00% 2 C:ribosome; C:mitochondrion    
contig00191 ---NA--- 319 0     0      
contig00192 ---NA--- 273 0     0      
contig00193 egg envelope component zpax 1126 20 3.46E-67 49.45% 3 F:F; P:P; C:viral envelope    
contig00194 ---NA--- 225 0     0      
contig00195 nucleolar protein 120kda 342 20 4.16E-40 93.90% 4 C:nucleolus; P:positive regulation of cell proliferation; F:protein binding; F:methyltransferase activity EC:2.1.1.0  
contig00196 suppressor of ty 4 homolog 1 681 20 1.07E-62 96.05% 12 F:zinc ion binding; P:zinc ion transport; P:positive regulation of transcription from RNA polymerase II promoter; P:negative regulation of transcription from RNA polymerase II promoter; F:positive transcription elongation factor activity; F:negative transcription elongation factor activity; F:transcription factor activity; P:RNA elongation from RNA polymerase II promoter; P:transcription antitermination; F:protein heterodimerization activity; P:chromatin remodeling; C:nucleus    
contig00197 poly binding cytoplasmic 1 1448 20 0 79.15% 9 C:cytoplasm; P:mRNA polyadenylation; P:RNA splicing; P:mRNA stabilization; C:spliceosomal complex; F:translation activator activity; F:poly(A) RNA binding; F:protein C-terminus binding; F:nucleotide binding    
contig00198 dead (asp-glu-ala-asp) box polypeptide 5 1533 20 0 93.75% 10 F:RNA binding; F:transcription cofactor activity; P:cell growth; F:ATP-dependent helicase activity; P:RNA splicing; F:ATP binding; C:spliceosomal complex; P:mRNA processing; F:RNA helicase activity; P:positive regulation of transcription    
contig00199 ---NA--- 222 0     0      
contig00200 ---NA--- 217 0     0      
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