Striped Bass Ovarian Transcriptome Sequences

Striped Bass Ovarian Transcriptome Sequence Contigs

Data source: Benjamin Reading & Craig Sullivan (NCSU) and Robert Chapman (SC-DNR)
Description: The Striped Bass ovarian transcriptome high-throuput sequencing project generated 144,302 short read cDNA sequences derived from ovarian mRNA representing all oocyte growth and maturation stages, including atretic oocytes and ovulated eggs. These sequences were clustered with CAP3, which resulted in 11,208 contigs. This data repository represents the blast annotations against the GO database.
Date: Oct 14, 2009; Updated: Jun 21, 2010

Records 11201 - 11208:

Sequence Name	Description	Length	Blast Hits	min E-value	Similarity	GO hits	GO names	Enzyme Codes
contig11201	---NA---	416	0			0
contig11202	---NA---	490	0			0
contig11203	acrc protein	1721	20	1.59E-139	62.20%	1	C:nucleus
contig11204	nadh dehydrogenase 1 beta subcomplex subunit 10	634	20	9.07E-79	82.10%	2	C:mitochondrial inner membrane; F:NADH dehydrogenase activity	EC:1.6.99.3
contig11205	---NA---	310	0			0
contig11206	high-mobility group box 1	1072	20	2.92E-68	92.40%	15	P:transport; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; F:nitric-oxide synthase regulator activity; P:cell morphogenesis; C:extracellular space; F:DNA binding; P:nervous system development; C:chromatin; F:protein binding; C:condensed chromosome; F:heparin binding; P:base-excision repair, DNA ligation; C:cytoplasm; P:nitric oxide biosynthetic process; C:nucleus
contig11207	---NA---	112	0			0
contig11208	---NA---	297	0			0

8 Rows returned.