Striped Bass Ovarian Transcriptome Sequence Contigs

 Records 1 - 100:
Sequence Name Description Length Blast Hits min E-value Similarity GO hits GO names Enzyme Codes InterPro Scan
contig00001 lin-37 homolog 567 4 1.67E-08 96.25% 0      
contig00002 ---NA--- 381 0     0      
contig00003 ---NA--- 1585 0     0      
contig00004 ---NA--- 319 0     0      
contig00005 ---NA--- 270 0     0      
contig00006 ---NA--- 251 0     0      
contig00007 ---NA--- 852 0     0      
contig00008 ---NA--- 252 0     0      
contig00009 ---NA--- 215 0     0      
contig00010 ---NA--- 112 0     0      
contig00011 ---NA--- 240 0     0      
contig00012 ---NA--- 110 0     0      
contig00013 choriogenin l 705 20 2.18E-29 61.10% 3 F:F; C:viral envelope; C:C    
contig00014 velo1 splice variant 1 2325 5 0 47.40% 0      
contig00015 ribosomal protein l23 480 20 2.43E-69 99.35% 5 C:nucleolus; C:cytosolic ribosome; F:structural constituent of ribosome; P:translation; P:ribosomal protein import into nucleus EC:3.6.5.3  
contig00016 usp39 protein 781 20 6.35E-47 88.75% 6 F:protein binding; P:ubiquitin-dependent protein catabolic process; F:ubiquitin thiolesterase activity; C:nucleus; F:zinc ion binding; P:spliceosome assembly EC:3.1.2.15  
contig00017 ---NA--- 374 0     0      
contig00018 ---NA--- 264 0     0      
contig00019 ---NA--- 215 0     0      
contig00020 heterogeneous nuclear ribonucleoprotein g 997 20 7.18E-34 79.70% 5 F:nucleic acid binding; C:ribonucleoprotein complex; C:nucleus; F:nucleotide binding; P:RNA processing    
contig00021 g patch domain containing 4 326 20 6.77E-43 77.80% 2 F:nucleic acid binding; C:intracellular    
contig00022 ---NA--- 100 0     0      
contig00023 ribosomal protein l37 372 20 3.49E-47 97.65% 5 F:structural constituent of ribosome; C:cytosolic large ribosomal subunit; F:zinc ion binding; P:translation; F:rRNA binding EC:3.6.5.3  
contig00024 ---NA--- 318 0     0      
contig00025 ---NA--- 225 0     0      
contig00026 ---NA--- 257 0     0      
contig00027 ---NA--- 333 0     0      
contig00028 ---NA--- 374 0     0      
contig00029 ---NA--- 176 0     0      
contig00030 histone h2a 447 20 2.94E-46 86.10% 12 P:defense response; P:positive regulation of growth rate; C:nucleosome; P:oviposition; F:zinc ion binding; P:embryonic development ending in birth or egg hatching; P:nucleus organization; F:DNA binding; P:nematode larval development; P:locomotion; P:nucleosome assembly; C:nucleus    
contig00031 ---NA--- 422 0     0      
contig00032 ornithine decarboxylase antizyme 2 1040 20 1.63E-60 76.55% 3 F:ornithine decarboxylase inhibitor activity; P:polyamine metabolic process; F:protein binding    
contig00033 subfamily member 1 789 20 6.10E-45 66.75% 12 F:Hsp70/Hsc70 protein regulator activity; P:regulation of translation; P:protein folding; C:integral to membrane; F:chaperone binding; F:ribosome binding; P:negative regulation of proteolysis; P:regulation of protein secretion; C:microsome; C:endoplasmic reticulum lumen; F:ATPase activator activity; C:nucleus    
contig00034 u6 snrna-associated sm-like protein lsm8 584 20 2.24E-19 97.50% 4 F:U6 snRNA binding; C:small nucleolar ribonucleoprotein complex; F:protein binding; P:nuclear mRNA splicing, via spliceosome    
contig00035 conserved helix-loop-helix ubiquitous kinase 169 4 1.51E-10 76.25% 10 F:IkappaB kinase activity; P:central nervous system development; P:somite specification; P:I-kappaB phosphorylation; F:protein binding; F:nucleotide binding; P:negative regulation of apoptosis; C:cytoplasm; C:nucleus; P:negative regulation of I-kappaB kinase/NF-kappaB cascade EC:2.7.11.10  
contig00036 claudin 4 731 20 5.69E-92 84.65% 8 F:identical protein binding; C:integral to plasma membrane; C:tight junction; C:membrane attack complex; P:pathogenesis; F:structural molecule activity; P:calcium-independent cell-cell adhesion; F:transmembrane receptor activity    
contig00037 ---NA--- 250 0     0      
contig00038 splicing arginine serine-rich 4 894 20 2.84E-76 80.15% 5 P:RNA splicing; ; C:nuclear speck; P:mRNA processing; F:nucleotide binding    
contig00039 ---NA--- 302 0     0      
contig00040 ---NA--- 398 0     0      
contig00041 ---NA--- 268 0     0      
contig00042 dead (asp-glu-ala-asp) box polypeptide 24 385 20 7.73E-15 69.00% 8 F:RNA binding; F:helicase activity; F:nucleic acid binding; F:ATP binding; F:nucleotide binding; F:hydrolase activity; C:nucleolus; F:ATP-dependent helicase activity    
contig00043 ---NA--- 341 0     0      
contig00044 gamma 1 618 19 2.58E-29 88.00% 5 P:T cell activation; C:cytoplasm; F:ATP binding; P:I-kappaB kinase/NF-kappaB cascade; F:protein binding    
contig00045 ---NA--- 284 0     0      
contig00046 nadh dehydrogenase fe-s protein 1 633 20 1.15E-65 93.00% 17 P:ATP metabolic process; P:oxygen and reactive oxygen species metabolic process; P:apoptosis; F:2 iron, 2 sulfur cluster binding; F:NADH dehydrogenase (ubiquinone) activity; C:mitochondrial respiratory chain complex I; P:ubiquinone biosynthetic process; P:cellular respiration; P:cellular iron ion homeostasis; P:regulation of mitochondrial membrane potential; C:mitochondrial intermembrane space; F:4 iron, 4 sulfur cluster binding; P:mitochondrial electron transport, NADH to ubiquinone; P:iron ion transport; F:protein binding; F:iron ion binding; P:electron transport EC:1.6.5.3  
contig00047 rad21 homolog 868 20 1.23E-12 95.45% 12 P:translation; C:ribosome; P:DNA repair; P:apoptosis; C:nuclear chromosome; F:calcium ion binding; F:rRNA binding; F:structural constituent of ribosome; P:chromosome segregation; P:cell division; F:protein binding; P:mitosis EC:3.6.5.3  
contig00048 middle subunit 699 20 8.36E-50 76.30% 4 P:cellular iron ion homeostasis; F:oxidoreductase activity; F:ferric iron binding; P:iron ion transport    
contig00049 eukaryotic translation initiation factor 3 subunit i 595 20 1.94E-21 94.20% 3 P:translation; F:protein binding; F:translation initiation factor activity EC:3.6.5.3  
contig00050 claudin 7 1863 20 1.24E-84 80.40% 6 C:membrane attack complex; C:extracellular space; P:calcium-independent cell-cell adhesion; F:structural molecule activity; F:identical protein binding; C:tight junction    
contig00051 ribosomal protein l31 510 20 1.20E-56 96.25% 5 F:structural constituent of ribosome; F:RNA binding; F:protein binding; C:cytosolic large ribosomal subunit; P:translation EC:3.6.5.3  
contig00052 ---NA--- 309 0     0      
contig00053 ---NA--- 340 0     0      
contig00054 heat shock protein 90 776 20 7.76E-106 97.45% 8 P:protein folding; F:nitric-oxide synthase regulator activity; F:TPR domain binding; C:melanosome; P:response to stress; F:ATP binding; F:unfolded protein binding; P:positive regulation of nitric oxide biosynthetic process    
contig00055 nicotinamide riboside kinase 2 1163 20 1.04E-114 89.15% 3 F:ATP binding; F:phosphotransferase activity, alcohol group as acceptor; P:integrin-mediated signaling pathway EC:2.7.1.0  
contig00056 ---NA--- 133 0     0      
contig00057 ---NA--- 227 0     0      
contig00058 condensin complex subunit 3 359 5 1.19E-15 82.60% 2 F:F; C:C    
contig00059 transmembrane protein 144 1665 20 1.18E-115 74.35% 1 C:membrane    
contig00060 coiled-coil domain containing 86 786 20 3.43E-32 61.40% 4 P:regulation of transcription, DNA-dependent; P:sex differentiation; F:transcription factor activity; C:nucleus    
contig00061 ---NA--- 262 0     0      
contig00062 ---NA--- 510 0     0      
contig00063 ---NA--- 199 0     0      
contig00064 dead (asp-glu-ala-asp) box polypeptide 24 1004 20 3.27E-135 83.80% 5 C:nucleolus; F:ATP-dependent RNA helicase activity; F:RNA binding; F:ATP binding; P:RNA metabolic process    
contig00065 polymerase ii (dna directed) polypeptide 25kda 905 20 4.00E-110 98.80% 5 F:DNA-directed RNA polymerase activity; C:DNA-directed RNA polymerase II, core complex; F:DNA binding; F:protein binding; P:transcription from RNA polymerase II promoter EC:2.7.7.6  
contig00066 ---NA--- 734 0     0      
contig00067 lsm7 u6 small nuclear rna associated ( cerevisiae) 377 20 1.05E-51 96.55% 7 C:cytoplasm; P:mRNA catabolic process; F:U6 snRNA binding; C:ribonucleoprotein complex; C:nucleus; F:protein heterodimerization activity; P:nuclear mRNA splicing, via spliceosome    
contig00068 ---NA--- 157 0     0      
contig00069 proteasome subunit alpha type-2 1358 20 7.89E-120 97.60% 5 C:proteasome core complex; F:threonine-type endopeptidase activity; P:ubiquitin-dependent protein catabolic process; F:endopeptidase inhibitor activity; C:nucleus EC:3.4.25.0  
contig00070 ubiquitin-like 5 608 20 1.98E-32 98.60% 2 C:cytoplasm; P:ubiquitin cycle    
contig00071 ---NA--- 290 0     0      
contig00072 zinc finger matrin-type protein 5 362 3 8.93E-06 74.67% 0      
contig00073 ---NA--- 513 0     0      
contig00074 epidermal growth factor receptor pathway substrate 15-like 1 728 20 1.24E-22 50.95% 5 C:coated pit; F:calcium ion binding; P:endocytosis; C:nucleus; C:plasma membrane    
contig00075 isoform cra_a 215 14 5.69E-10 87.07% 0      
contig00076 ---NA--- 105 0     0      
contig00077 eukaryotic translation initiation factor 4e family member 2 267 20 3.15E-24 98.30% 6 C:cytoplasm; P:translational initiation; F:protein binding; F:RNA cap binding; F:translation initiation factor activity; P:regulation of translation    
contig00078 ---NA--- 203 0     0      
contig00079 ---NA--- 115 0     0      
contig00080 small nuclear ribonucleoprotein polypeptide c 724 20 4.21E-31 100.00% 5 C:U1 snRNP; P:protein folding; P:RNA splicing; F:RNA binding; F:zinc ion binding    
contig00081 mitochondrial ribosomal protein s30 1868 20 7.35E-178 71.05% 1 P:apoptosis    
contig00082 ---NA--- 578 0     0      
contig00083 ---NA--- 362 0     0      
contig00084 proteasome ( macropain) 26s 1 1532 20 0 99.00% 8 F:peptidase activity; F:ATPase activity; F:protein binding; P:protein catabolic process; F:ATP binding; C:proteasome complex; C:nucleus; C:cytosol    
contig00085 ---NA--- 264 0     0      
contig00086 ---NA--- 265 0     0      
contig00087 ---NA--- 230 0     0      
contig00088 nin1 rpn12 binding protein 1 homolog ( cerevisiae) 694 20 5.26E-81 87.90% 5 C:cytoplasm; C:nucleolus; P:maturation of SSU-rRNA; F:zinc ion binding; P:ribosomal small subunit biogenesis    
contig00089 histone h2a type 1 239 20 2.33E-19 100.00% 0      
contig00090 sra stem-loop-interacting rna-binding mitochondrial precursor 712 20 4.33E-33 78.15% 3 F:nucleic acid binding; P:transcription; C:intracellular membrane-bounded organelle    
contig00091 mitochondrial ribosomal protein s34 983 20 5.63E-92 79.05% 4 C:cytoplasmic part; C:ribonucleoprotein complex; C:intracellular organelle; F:protein binding    
contig00092 cyclin b1 738 20 5.53E-50 87.25% 3 P:mitosis; C:nucleus; P:cell division    
contig00093 peptidyl-prolyl cis-trans mitochondrial precursor 945 20 1.64E-101 88.35% 6 C:extracellular space; P:protein folding; C:membrane fraction; C:mitochondrial matrix; F:cyclosporin A binding; F:peptidyl-prolyl cis-trans isomerase activity EC:5.2.1.8  
contig00094 wd repeat domain 3 137 4 1.11E-05 94.50% 1 P:rRNA processing    
contig00095 ---NA--- 249 0     0      
contig00096 ---NA--- 245 0     0      
contig00097 ---NA--- 362 0     0      
contig00098 ---NA--- 246 0     0      
contig00099 ---NA--- 387 0     0      
contig00100 ribosomal protein l11 577 20 5.40E-50 98.10% 7 C:nucleolus; F:structural constituent of ribosome; F:protein binding; P:protein targeting; C:cytosolic large ribosomal subunit; P:translation; F:rRNA binding EC:3.6.5.3  
100 Rows returned.
Go to records:
1-100, 101-200, 201-300, 301-400, 401-500, 501-600, 601-700, 701-800, 801-900, 901-1000, 1001-1100, 1101-1200, 1201-1300, 1301-1400, 1401-1500, 1501-1600, 1601-1700, 1701-1800, 1801-1900, 1901-2000, 2001-2100, 2101-2200, 2201-2300, 2301-2400, 2401-2500, 2501-2600, 2601-2700, 2701-2800, 2801-2900, 2901-3000, 3001-3100, 3101-3200, 3201-3300, 3301-3400, 3401-3500, 3501-3600, 3601-3700, 3701-3800, 3801-3900, 3901-4000, 4001-4100, 4101-4200, 4201-4300, 4301-4400, 4401-4500, 4501-4600, 4601-4700, 4701-4800, 4801-4900, 4901-5000, 5001-5100, 5101-5200, 5201-5300, 5301-5400, 5401-5500, 5501-5600, 5601-5700, 5701-5800, 5801-5900, 5901-6000, 6001-6100, 6101-6200, 6201-6300, 6301-6400, 6401-6500, 6501-6600, 6601-6700, 6701-6800, 6801-6900, 6901-7000, 7001-7100, 7101-7200, 7201-7300, 7301-7400, 7401-7500, 7501-7600, 7601-7700, 7701-7800, 7801-7900, 7901-8000, 8001-8100, 8101-8200, 8201-8300, 8301-8400, 8401-8500, 8501-8600, 8601-8700, 8701-8800, 8801-8900, 8901-9000, 9001-9100, 9101-9200, 9201-9300, 9301-9400, 9401-9500, 9501-9600, 9601-9700, 9701-9800, 9801-9900, 9901-10000, 10001-10100, 10101-10200, 10201-10300, 10301-10400, 10401-10500, 10501-10600, 10601-10700, 10701-10800, 10801-10900, 10901-11000, 11001-11100, 11101-11200, 11201-11208
Web Access Statistics © 2003-2025 NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team 		Helpdesk