Striped Bass Ovarian Transcriptome Sequences

Striped Bass Ovarian Transcriptome Sequence Contigs

Data source: Benjamin Reading & Craig Sullivan (NCSU) and Robert Chapman (SC-DNR)
Description: The Striped Bass ovarian transcriptome high-throuput sequencing project generated 144,302 short read cDNA sequences derived from ovarian mRNA representing all oocyte growth and maturation stages, including atretic oocytes and ovulated eggs. These sequences were clustered with CAP3, which resulted in 11,208 contigs. This data repository represents the blast annotations against the GO database.
Date: Oct 14, 2009; Updated: Jun 21, 2010

A snapshot of the data:

Sequence Name	Description	Length	Blast Hits	min E-value	Similarity	GO hits	GO names	Enzyme Codes
contig00013	choriogenin l	705	20	2.18E-29	61.10%	3	F:F; C:viral envelope; C:C
contig00015	ribosomal protein l23	480	20	2.43E-69	99.35%	5	C:nucleolus; C:cytosolic ribosome; F:structural constituent of ribosome; P:translation; P:ribosomal protein import into nucleus	EC:3.6.5.3
contig00016	usp39 protein	781	20	6.35E-47	88.75%	6	F:protein binding; P:ubiquitin-dependent protein catabolic process; F:ubiquitin thiolesterase activity; C:nucleus; F:zinc ion binding; P:spliceosome assembly	EC:3.1.2.15
contig00020	heterogeneous nuclear ribonucleoprotein g	997	20	7.18E-34	79.70%	5	F:nucleic acid binding; C:ribonucleoprotein complex; C:nucleus; F:nucleotide binding; P:RNA processing
contig00021	g patch domain containing 4	326	20	6.77E-43	77.80%	2	F:nucleic acid binding; C:intracellular
contig00023	ribosomal protein l37	372	20	3.49E-47	97.65%	5	F:structural constituent of ribosome; C:cytosolic large ribosomal subunit; F:zinc ion binding; P:translation; F:rRNA binding	EC:3.6.5.3
contig00030	histone h2a	447	20	2.94E-46	86.10%	12	P:defense response; P:positive regulation of growth rate; C:nucleosome; P:oviposition; F:zinc ion binding; P:embryonic development ending in birth or egg hatching; P:nucleus organization; F:DNA binding; P:nematode larval development; P:locomotion; P:nucleosome assembly; C:nucleus
contig00032	ornithine decarboxylase antizyme 2	1040	20	1.63E-60	76.55%	3	F:ornithine decarboxylase inhibitor activity; P:polyamine metabolic process; F:protein binding
contig00033	subfamily member 1	789	20	6.10E-45	66.75%	12	F:Hsp70/Hsc70 protein regulator activity; P:regulation of translation; P:protein folding; C:integral to membrane; F:chaperone binding; F:ribosome binding; P:negative regulation of proteolysis; P:regulation of protein secretion; C:microsome; C:endoplasmic reticulum lumen; F:ATPase activator activity; C:nucleus
contig00034	u6 snrna-associated sm-like protein lsm8	584	20	2.24E-19	97.50%	4	F:U6 snRNA binding; C:small nucleolar ribonucleoprotein complex; F:protein binding; P:nuclear mRNA splicing, via spliceosome

10 Rows returned.

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