Release 56
(Apr 24, 2025)

QTL 9872 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: last rib back fat Product Trait Ontology: n/a
Symbol: LRIBF Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:5
QTL Peak Location:132.2 (cM)
QTL Span:110.43-110.57 (cM)
91.8-91.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:-
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SOCS2 (suppressor of cytokine signaling 2)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #9872
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were from a Berkshire x Yorkshire intercross reference family.
     Breeds associated:
    Design:Animals were genotyped for 16 markers, including microsatellites and genes, and analyzed for growth, fatness, and meat quality traits.
    Analysis:A regression model was used for QTL analysis. Association analysis was carried out using ANOVA with a mixed model.
    Software:CRIMAP, SAS, QTL Express
    Notes: 
    Links:Edit

     Reference
    Authors:Ramos, A M; Pita, R H; Malek, M; Lopes, P S; Guimaraes, S E F; Rothschild, M F
    Affiliation:Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, IA 50011, USA; mfrothsc@iastate.edu
    Title:Analysis of the mouse high-growth region in pigs.
    Journal:Journal of animal breeding and genetics , 2009, 126(5): 404-12
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #19765167
  • Add your comments
  • Note similar findings
  • Note contradictions
  • Cite this Data:

    Animal QTLdb: QTL9872 was published in 2009, and was curated into QTLdb on 2012-07-31. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:9872

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team