| QTL Map Information |
|---|
| Chromosome: | 11 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
62.3-62.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80901162 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.2E-06 | | FDR | 0.01 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #95945
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | 350 DUROC BREED BARROWS |
| Breeds associated:
|
| Design: | The barrows were bred under intensive conditions of feeding and handling and they were slaughtered when they reached 122 kg of live weight (≈180-200 days). After slaughter in a commercial abattoir, carcass weight (CW) registers were obtained with a scale. Lean meat percentage (LE%) was inferred on the basis of AutoFom fat and muscle thickness data. The following traits were measured in the cutting room 24-hours after slaughtering: (i) BFT measured with a ruler at the mid-dorsal line of the spinal col |
| Analysis: | Pigs were genotyped for ~ 60,000 SNP markers with the Porcine SNP60 BeadChip (Illumina Inc., San Diego, CA), as previously reported (Manunza et al. 2014). The resulting SNP dataset was filtered by excluding individuals with > 10% missing genotypes. We also removed SNPs with a minimum allele frequency lower than 0.05 or a call rate < 95%. Markers that departed significantly from the Hardy-Weinberg equilibrium expectations (significance threshold with P-value <0.001) and those located on sexual chromosomes we |
| Software: | Genome wide Efficient Mixed-Model Association (GEMMA); software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Paulina G. Eusebi, Rayner Gonz�lez-Prendes, Raquel Quintanilla, Joan Tibau, Taina Figueiredo Cardoso, Alex Clop, Marcel Amills |
| Affiliation: | Center for Research in Agricultural Genomics |
| Title: | A genome-wide association analysis for carcass traits in a commercial Duroc pig population |
| Journal: | Animal Genetics, 2017, 48(4):466-469. |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #28696024
Add your comments
Note similar findings
Note contradictions
|
