| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 14.91 (cM) |
| QTL Span: | 14.91-14.91 (cM)
15.5-15.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80852771 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc x Erhualian F2 pigs. ZFAT variants were genotyped in 15 outbred populations of Chinese and Western pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for susceptibility to enterotoxigenic E. coli F41. A total of 39,454 SNPs were used for analysis. |
| Analysis: | Single-SNP association analysis was performed using a covariance matrix derived from genome-wide SNP data. |
| Software: | ROADTRIPS, GenABEL in R, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ji HY, Yang B, Zhang ZY, Ouyang J, Yang M, Zhang XF, Zhang WC, Su Y, Zhao KW, Xiao SJ, Yan XM, Ren J, Huang LS |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Science, Jiangxi Agricultural University, 330045 Nanchang, China |
| Title: | A genome-wide association analysis for susceptibility of pigs to enterotoxigenic Escherichia coli F41 |
| Journal: | Animal : an international journal of animal bioscience, 2016, 10(10):1602-8 |
| Links: |
PubMed | Abstract | List all data
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